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AMDSBA4_39

Alias: AMDSBA4_C38

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Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_39_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..647
DNA (645bp) protein (215aa)
pleD; diguanylate cyclase
Diguanylate cyclase n=2 Tax=Sulfobacillus acidophilus RepID=G8TUN3_9FIRM (db=UNIREF evalue=1.1e-22 bit_score=112.5 identity=36.4 coverage=87.44186046511628)
seg (db=Seg db_id=seg from=10 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA4_39_2

Not on your lists

1041..3104
DNA (2064bp) protein (688aa)
hypothetical protein; putative EAL and GAF domains
Diguanylate cyclase/phosphodiesterase n=1 Tax=Pseudomonas putida W619 RepID=B1J9N2_PSEPW (db=UNIREF evalue=6.0e-25 bit_score=121.7 identity=31.3 coverage=36.04651162790697)
seg (db=Seg db_id=seg from=313 to=333)
seg (db=Seg db_id=seg from=453 to=464)
AMDSBA4_39_3
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3393..4037)
DNA (645bp) protein (215aa)
polar amino acid ABC transporter inner membrane subunit
Ectoine/hydroxyectoine ABC transporter, permease EhuD n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=D6XB68_9ACTO (db=UNIREF evalue=1.5e-19 bit_score=102.1 identity=29.9 coverage=93.48837209302326)
seg (db=Seg db_id=seg from=28 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=44)
AMDSBA4_39_4
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4037..4843)
DNA (807bp) protein (269aa)
ABC transporter-like protein
ABC transporter-like protein
Macrolide export ATP-binding/permease protein MacB n=1 Tax=Azoarcus sp. BH72 RepID=MACB_AZOSB (db=UNIREF evalue=1.5e-24 bit_score=119.0 identity=33.3 coverage=88.47583643122677)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=7 to=252 evalue=1.5e-118)
AMDSBA4_39_5
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4821..5363)
DNA (543bp) protein (181aa)
polar amino acid ABC transporter inner membrane subunit
Glutamate/aspartate transport system permease protein gltK n=961 Tax=Enterobacteriaceae RepID=GLTK_ECO57 (db=UNIREF evalue=4.2e-18 bit_score=97.1 identity=31.1 coverage=92.81767955801105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=149 to=171)
AMDSBA4_39_6
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5559..6422)
DNA (864bp) protein (288aa)
family 3 extracellular solute-binding protein
Extracellular solute-binding protein, family 3 n=3 Tax=Bifidobacterium RepID=B7GPY4_BIFLS (db=UNIREF evalue=2.0e-14 bit_score=85.5 identity=28.8 coverage=87.5)
seg (db=Seg db_id=seg from=219 to=228)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA4_39_7
Bacillus simplex, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6607..8259)
DNA (1653bp) protein (551aa)
seg (db=Seg db_id=seg from=430 to=447)
seg (db=Seg db_id=seg from=76 to=86)
(db=HMMPfam db_id=PF07905 from=8 to=127 evalue=2.0e-31 interpro_id=IPR012914 interpro_description=Purine catabolism PurC-like)
Regulator of polyketide synthase expression {ECO:0000313|EMBL:CEG34800.1}; TaxID=1478 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus simplex.;"
AMDSBA4_39_8
Bacillus ginsengihumi, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8472..9464)
DNA (993bp) protein (331aa)
ectoine utilization protein EutB
L-threonine dehydratase biosynthetic IlvA n=2 Tax=Mycobacterium leprae RepID=ILVA_MYCLE (db=UNIREF evalue=1.7e-38 bit_score=165.6 identity=33.9 coverage=90.33232628398792)
seg (db=Seg db_id=seg from=283 to=291)
Tryptophan synthase beta subunit-like PLP-dependent enzymes (db=superfamily db_id=SSF53686 from=6 to=315 evalue=6.5e-85 interpro_id=IPR001926 interpro_description=Pyridoxal phosphate-dependent enzyme, beta subunit GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA4_39_9
Bacillus sp. 2_A_57_CT2, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9457..10923)
DNA (1467bp) protein (489aa)
aldehyde dehydrogenase (EC:1.2.1.-)
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase n=341 Tax=Enterobacteriaceae RepID=HPCC_ECOLX (db=UNIREF evalue=1.2e-56 bit_score=226.5 identity=30.3 coverage=93.04703476482618)
ALDEHYDE DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR11699 from=64 to=479 evalue=2.6e-176)
ALDEHYDE-DEHYDROGENASE (db=HMMPanther db_id=PTHR11699:SF30 from=64 to=479 evalue=2.6e-176)
AMDSBA4_39_10
Geobacillus thermodenitrificans, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10953..11993)
DNA (1041bp) protein (347aa)
homoserine dehydrogenase
Homoserine dehydrogenase n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A3S3_RHIET (db=UNIREF evalue=1.6e-74 bit_score=285.4 identity=46.4 coverage=97.69452449567724)
seg (db=Seg db_id=seg from=315 to=328)
HOMOSER_DHGENASE (db=PatternScan db_id=PS01042 from=207 to=229 evalue=0.0 interpro_id=IPR019811 interpro_description=Homoserine dehydrogenase, conserved site GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA4_39_11
Lysinibacillus massiliensis, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12016..13251)
DNA (1236bp) protein (412aa)
N-acyl-L-amino acid amidohydrolase rbh
N-acyl-L-amino acid amidohydrolase n=1 Tax=Geobacillus stearothermophilus RepID=AMAA_GEOSE (db=UNIREF evalue=7.0e-53 bit_score=213.8 identity=38.3 coverage=75.24271844660194)
seg (db=Seg db_id=seg from=64 to=78)
amidohydrolases: amidohydrolase (db=HMMTigr db_id=TIGR01891 from=26 to=393 evalue=1.5e-147 interpro_id=IPR017439 interpro_description=Amidohydrolase GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA4_39_12
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13229..14443)
DNA (1215bp) protein (405aa)
cystathionine gamma-synthase (EC:2.5.1.48)
Cystathionine gamma-synthase n=1 Tax=Pyrobaculum islandicum DSM 4184 RepID=A1RSX5_PYRIL (db=UNIREF evalue=3.3e-63 bit_score=248.1 identity=39.5 coverage=82.96296296296296)
seg (db=Seg db_id=seg from=174 to=182)
Cystathionine gamma-synthase (db=HMMPIR db_id=PIRSF001434 from=12 to=397 evalue=3.0e-173 interpro_id=IPR000277 interpro_description=Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMDSBA4_39_13
Geobacillus thermodenitrificans, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14457..15446)
DNA (990bp) protein (330aa)
ectoine utilization protein EutC
ectoine utilization protein EutC
Ornithine cyclodeaminase n=1 Tax=Methanoregula boonei 6A8 RepID=A7I6K1_METB6 (db=UNIREF evalue=3.8e-33 bit_score=147.9 identity=32.8 coverage=88.48484848484848)
seg (db=Seg db_id=seg from=114 to=125)
AMDSBA4_39_14
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15468..16643)
DNA (1176bp) protein (392aa)
Xaa-Pro aminopeptidase
Xaa-Pro aminopeptidase
Putative hydrolasepeptidase protein n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JMU1_9RHOB (db=UNIREF evalue=7.3e-92 bit_score=343.2 identity=43.9 coverage=98.21428571428571)
AMDSBA4_39_15
unknown

Not on your lists

16809..16961
DNA (153bp) protein (51aa)
16809..16961 + ( gc_cont=0.516)
AMDSBA4_39_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17170..17646
DNA (477bp) protein (159aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG7_9FIRM (db=UNIREF evalue=2.6e-48 bit_score=197.2 identity=71.2 coverage=82.38993710691824)
seg (db=Seg db_id=seg from=8 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
AMDSBA4_39_17
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18252..19421
DNA (1170bp) protein (390aa)
hypothetical protein
Acyltransferase 3 n=4 Tax=Pantoea RepID=E0LVZ5_9ENTR (db=UNIREF evalue=4.9e-16 bit_score=91.3 identity=35.1 coverage=43.58974358974359)
transmembrane_regions (db=TMHMM db_id=tmhmm from=264 to=281)
transmembrane_regions (db=TMHMM db_id=tmhmm from=294 to=312)
AMDSBA4_39_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19690..21624)
DNA (1935bp) protein (645aa)
phosphatase / phospholipase C
Phosphoesterase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJ44_BEII9 (db=UNIREF evalue=6.7e-26 bit_score=124.8 identity=28.1 coverage=54.10852713178295)
seg (db=Seg db_id=seg from=401 to=414)
seg (db=Seg db_id=seg from=517 to=540)
AMDSBA4_39_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22040..24073
DNA (2034bp) protein (678aa)
phosphoesterase
Phosphoesterase n=2 Tax=Sulfobacillus acidophilus RepID=G8TVN3_9FIRM (db=UNIREF evalue=3.8e-48 bit_score=198.7 identity=37.5 coverage=46.312684365781706)
seg (db=Seg db_id=seg from=219 to=234)
seg (db=Seg db_id=seg from=660 to=675)
AMDSBA4_39_20
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25785..26429)
DNA (645bp) protein (215aa)
RNA polymerase sigma-30 subunit SigH
RNA polymerase sigma-H factor (db=HMMPIR db_id=PIRSF002939 from=1 to=214 evalue=9.0e-34 interpro_id=IPR016371 interpro_description=RNA polymerase sigma-H factor GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=29 to=207 evalue=2.8e-23 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=8 to=123 evalue=1.3e-19 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto
AMDSBA4_39_21
unknown

Not on your lists

26801..27262
DNA (462bp) protein (154aa)
26801..27262 + ( gc_cont=0.524)
AMDSBA4_39_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27131..28402)
DNA (1272bp) protein (424aa)
(db=HMMPfam db_id=PF07282 from=361 to=423 evalue=8.5e-13 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
transposase, IS605 OrfB family
Uncharacterized protein {ECO:0000313|EMBL:AEW05165.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Transposase, IS605 OrfB family n=1 Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8TYY6_SULAD
AMDSBA4_39_23
Crocosphaera watsonii, Crocosphaera, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(28362..28556)
DNA (195bp) protein (65aa)
Resolvase domain-containing protein
Putative uncharacterized protein n=2 Tax=Nodularia spumigena CCY9414 RepID=A0ZD57_NODSP (db=UNIREF evalue=1.0e-11 bit_score=74.3 identity=68.0 coverage=75.38461538461539)
coiled-coil (db=Coil db_id=coil from=40 to=61 evalue=NA)
Regulatory protein, MerR:Resolvase, N-terminal {ECO:0000313|EMBL:EAM53349.1}; TaxID=165597 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Crocosphaera.;" source="Crocosphaera
AMDSBA4_39_24
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29656..30726
DNA (1071bp) protein (357aa)
Integral membrane protein DUF6 n=3 Tax=Staphylococcus RepID=B9CSK9_STACP (db=UNIREF evalue=2.5e-46 bit_score=191.8 identity=35.6 coverage=78.15126050420169)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=84)
transmembrane_regions (db=TMHMM db_id=tmhmm from=270 to=292)
transmembrane_regions (db=TMHMM db_id=tmhmm from=243 to=260)
AMDSBA4_39_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30933..32009
DNA (1077bp) protein (359aa)
cell envelope-related transcriptional attenuator
Cell envelope-related transcriptional attenuator n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WS99_BACT2 (db=UNIREF evalue=1.4e-33 bit_score=149.4 identity=39.0 coverage=59.33147632311978)
seg (db=Seg db_id=seg from=20 to=34)
seg (db=Seg db_id=seg from=221 to=242)
Displaying 25 items

View Taxonomy