ggKbase home page

AMDSBA5_2

Alias: AMDSBA5_C1

Search features with annotation key words

Displaying items 1-30 of 140 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_2_1
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

455..613
DNA (159bp) protein (53aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein {ECO:0000313|EMBL:KJS11158.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
AMDSBA5_2_2
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

745..1428
DNA (684bp) protein (228aa)
ArsR family transcriptional regulator
Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U8B7_PHYPA (db=UNIREF evalue=8.4e-16 bit_score=89.7 identity=37.4 coverage=46.49122807017544)
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=116 to=221 evalue=1.3e-30 interpro_id=IPR001763 interpro_description=Rhodanese-like)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=11 to=102 evalue=1.2e-22)
AMDSBA5_2_3
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1447..2574
DNA (1128bp) protein (376aa)
iscS_[H]; Cysteine desulfurase (EC:2.8.1.7)
Aminotransferase, class V n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZR4_9BACT (db=UNIREF evalue=3.1e-76 bit_score=291.2 identity=45.3 coverage=98.40425531914893)
seg (db=Seg db_id=seg from=127 to=141)
AA_TRANSFER_CLASS_5 (db=PatternScan db_id=PS00595 from=191 to=210 evalue=0.0 interpro_id=IPR020578 interpro_description=Aminotransferase class-V pyridoxal-phosphate binding site)
AMDSBA5_2_4
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2574..3323
DNA (750bp) protein (250aa)
type 11 methyltransferase
UbiE/COQ5 methyltransferase n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L111_9BACT (db=UNIREF evalue=5.9e-31 bit_score=140.2 identity=36.0 coverage=87.6)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=16 to=194 evalue=2.7e-33)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=4 to=203 evalue=1.3e-31)
AMDSBA5_2_5
RBG_16_Chloroflexi_54_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(4165..5412)
DNA (1248bp) protein (416aa)
arabinose efflux permease family protein
Predicted protein n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=D6X5Z3_STRPR (db=UNIREF evalue=7.6e-23 bit_score=114.0 identity=25.1 coverage=92.0673076923077)
seg (db=Seg db_id=seg from=316 to=332)
transmembrane_regions (db=TMHMM db_id=tmhmm from=316 to=338)
AMDSBA5_2_6
unknown

Not on your lists

comp(6120..6734)
DNA (615bp) protein (205aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
AMDSBA5_2_7
unknown

Not on your lists

7281..7667
DNA (387bp) protein (129aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA5_2_8
unknown

Not on your lists

8261..8662
DNA (402bp) protein (134aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
AMDSBA5_2_9
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

9168..10610
DNA (1443bp) protein (481aa)
amino acid permease-associated protein
Amino acid permease n=1 Tax=Sulfolobus islandicus HVE10/4 RepID=F0NK04_SULIH (db=UNIREF evalue=2.8e-77 bit_score=295.0 identity=38.7 coverage=89.81288981288982)
transmembrane_regions (db=TMHMM db_id=tmhmm from=406 to=425)
transmembrane_regions (db=TMHMM db_id=tmhmm from=431 to=453)
AMDSBA5_2_10
Thermoplasmatales archaeon Gpl, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(10637..11935)
DNA (1299bp) protein (433aa)
transporter
Drug resistance transporter n=1 Tax=Streptomyces sp. e14 RepID=D6K9M2_9ACTO (db=UNIREF evalue=2.7e-07 bit_score=62.4 identity=27.9 coverage=44.80369515011547)
seg (db=Seg db_id=seg from=311 to=329)
seg (db=Seg db_id=seg from=288 to=300)
AMDSBA5_2_11
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12106..12855)
DNA (750bp) protein (250aa)
HAD-superfamily hydrolase
seg (db=Seg db_id=seg from=209 to=220)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=223 evalue=8.5e-37 interpro_id=IPR023214 interpro_description=HAD-like domain)
2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 (db=HMMPanther db_id=PTHR18901 from=3 to=208 evalue=3.1e-31)
AMDSBA5_2_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12862..14502)
DNA (1641bp) protein (547aa)
Formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=2 Tax=Aeromonas RepID=FTHS_AERHH (db=UNIREF evalue=9.4e-122 bit_score=443.0 identity=43.3 coverage=98.35466179159049)
seg (db=Seg db_id=seg from=90 to=104)
AMDSBA5_2_13
unknown

Not on your lists

14704..15087
DNA (384bp) protein (128aa)
14704..15087 + ( gc_cont=0.516)
AMDSBA5_2_14
Ferroplasma sp. Type II, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(15005..16081)
DNA (1077bp) protein (359aa)
Lactate dehydrogenase (EC:1.1.1.26)
2-hydroxyacid dehydrogenase, putative n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=O28495_ARCFU (db=UNIREF evalue=1.1e-41 bit_score=176.4 identity=34.1 coverage=87.1866295264624)
seg (db=Seg db_id=seg from=319 to=331)
D_2_HYDROXYACID_DH_3 (db=PatternScan db_id=PS00671 from=229 to=245 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_2_15
unknown

Not on your lists

comp(16158..16385)
DNA (228bp) protein (76aa)
16158..16385 - ( gc_cont=0.395)
AMDSBA5_2_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16437..17300
DNA (864bp) protein (288aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=26 to=88 evalue=1.0e-10 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=32 to=88 evalue=4.2e-08 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF01381 from=36 to=84 evalue=1.6e-06 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=35 to=90 evalue=4.6e-06 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA5_2_17
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17358..17765
DNA (408bp) protein (136aa)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=2 to=109 evalue=3.3e-09 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=2 to=107 evalue=3.0e-05 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
Glutaredoxin-like domain protein n=1 Tax=Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQR3_BACT2
Glutaredoxin-like domain protein {ECO:0000313|EMBL:ADG06672.1}; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2
AMDSBA5_2_18
unknown

Not on your lists

17784..17996
DNA (213bp) protein (71aa)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=3 to=66 evalue=0.00024 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AMDSBA5_2_19
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17965..18870)
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Bacillus cereus AH603 RepID=C2Y425_BACCE (db=UNIREF evalue=1.2e-57 bit_score=229.2 identity=40.8 coverage=92.71523178807946)
hypothetical protein
seg (db=Seg db_id=seg from=67 to=81)
seg (db=Seg db_id=seg from=129 to=139)
AMDSBA5_2_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18870..19160)
DNA (291bp) protein (97aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U1E9_9FIRM (db=UNIREF evalue=3.3e-22 bit_score=109.8 identity=54.7 coverage=94.84536082474226)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=48)
AMDSBA5_2_21
RIFOXYA1_FULL_Paenibacillus_44_5_curated, Firmicutes, Bacteria

Not on your lists

comp(19205..19555)
DNA (351bp) protein (117aa)
yrkF; hypothetical protein
Carboxymethylenebutenolidase-related protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LK02_9FIRM (db=UNIREF evalue=9.3e-11 bit_score=72.0 identity=41.5 coverage=78.63247863247864)
seg (db=Seg db_id=seg from=84 to=95)
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=15 to=110 evalue=2.7e-32 interpro_id=IPR001763 interpro_description=Rhodanese-like)
AMDSBA5_2_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19658..20614)
DNA (957bp) protein (319aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase n=2 Tax=Prevotella oris RepID=D1QTJ4_9BACT (db=UNIREF evalue=2.6e-71 bit_score=274.6 identity=45.8 coverage=94.67084639498434)
seg (db=Seg db_id=seg from=176 to=194)
CYS_SYNTHASE (db=PatternScan db_id=PS00901 from=37 to=55 evalue=0.0 interpro_id=IPR001216 interpro_description=Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535))
AMDSBA5_2_23
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

20752..22002
DNA (1251bp) protein (417aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=390 to=412)
seg (db=Seg db_id=seg from=49 to=63)
seg (db=Seg db_id=seg from=268 to=282)
transmembrane_regions (db=TMHMM db_id=tmhmm from=148 to=167)
AMDSBA5_2_24
unknown

Not on your lists

22096..22395
DNA (300bp) protein (100aa)
22096..22395 + ( gc_cont=0.497)
AMDSBA5_2_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22427..23314
DNA (888bp) protein (296aa)
phosphoesterase DHHA1
phosphoesterase DHHA1
Phosphoesterase DHHA1 n=2 Tax=Sulfobacillus acidophilus RepID=G8U1F3_9FIRM (db=UNIREF evalue=1.4e-82 bit_score=312.0 identity=53.6 coverage=96.62162162162163)
AMDSBA5_2_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23295..24281)
DNA (987bp) protein (329aa)
quinone oxidoreductase PIG3
Zinc-containing alcohol dehydrogenase superfamily protein n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3KYY8_9GAMM (db=UNIREF evalue=4.9e-41 bit_score=174.1 identity=35.5 coverage=97.87234042553192)
seg (db=Seg db_id=seg from=52 to=59)
seg (db=Seg db_id=seg from=69 to=80)
AMDSBA5_2_27
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24475..25650
DNA (1176bp) protein (392aa)
arabinose efflux permease family protein
4-hydroxybenzoate transporter n=8 Tax=Ralstonia RepID=A3RZ16_RALSL (db=UNIREF evalue=2.5e-07 bit_score=62.4 identity=23.6 coverage=43.36734693877551)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
seg (db=Seg db_id=seg from=105 to=118)
AMDSBA5_2_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25709..26383
DNA (675bp) protein (225aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Paenibacillus curdlanolyticus YK9 RepID=E0I527_9BACL (db=UNIREF evalue=1.4e-34 bit_score=152.1 identity=42.6 coverage=84.88888888888889)
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHILIN) (db=HMMPanther db_id=PTHR11071:SF35 from=60 to=218 evalue=1.9e-38)
Cyclophilin-like (db=superfamily db_id=SSF50891 from=45 to=218 evalue=3.4e-40 interpro_id=IPR002130 interpro_description=Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain GO=Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755), Biological Process: protein folding (GO:0006457))
AMDSBA5_2_29
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

26413..26892
DNA (480bp) protein (160aa)
protein tyrosine phosphatase (EC:3.1.3.48)
LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE (db=HMMPanther db_id=PTHR11717 from=13 to=158 evalue=1.9e-53 interpro_id=IPR017867 interpro_description=Protein-tyrosine phosphatase, low molecular weight GO=Molecular Function: protein tyrosine phosphatase activity (GO:0004725), Biological Process: protein dephosphorylation (GO:0006470))
LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE (db=HMMPanther db_id=PTHR11717:SF7 from=13 to=158 evalue=1.9e-53)
no description (db=Gene3D db_id=G3DSA:3.40.50.270 from=8 to=153 evalue=5.6e-46)
AMDSBA5_2_30
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(26857..27489)
DNA (633bp) protein (211aa)
hypothetical protein
Putative uncharacterized protein n=52 Tax=Brucella RepID=F2GT53_BRUM5 (db=UNIREF evalue=4.1e-17 bit_score=94.0 identity=30.6 coverage=94.3127962085308)
BB1717-like (db=superfamily db_id=SSF143081 from=2 to=199 evalue=1.4e-49)
(db=HMMPfam db_id=PF02586 from=1 to=198 evalue=1.9e-38 interpro_id=IPR003738 interpro_description=Protein of unknown function DUF159)
Displaying items 1-30 of 140 in total

View Taxonomy