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AMDSBA5_4

Alias: AMDSBA5_C3

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Displaying items 1-30 of 148 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA5_4_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..670)
DNA (669bp) protein (223aa)
transposase (IS4 family protein)
Transposase (IS4 family protein) n=4 Tax=Sulfobacillus acidophilus RepID=G8TUH3_9FIRM (db=UNIREF evalue=2.1e-51 bit_score=208.0 identity=50.2 coverage=86.09865470852019)
seg (db=Seg db_id=seg from=105 to=116)
Uncharacterized protein {ECO:0000313|EMBL:AEW04620.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA5_4_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(933..1907)
DNA (975bp) protein (325aa)
ATP-NAD/AcoX kinase
ATP-NAD/AcoX kinase
ATP-NAD/AcoX kinase n=2 Tax=Sulfobacillus acidophilus RepID=G8TSL2_9FIRM (db=UNIREF evalue=5.8e-95 bit_score=353.2 identity=56.7 coverage=96.92307692307692)
AMDSBA5_4_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1920..2462)
DNA (543bp) protein (181aa)
HTH_MARR_1 (db=PatternScan db_id=PS01117 from=99 to=133 evalue=0.0 interpro_id=IPR023187 interpro_description=Transcriptional regulator MarR-type, conserved site)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=37 to=174 evalue=4.7e-31)
no description (db=HMMSmart db_id=SM00347 from=60 to=161 evalue=9.9e-23 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF01047 from=67 to=125 evalue=1.8e-17 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA5_4_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2577..3356)
DNA (780bp) protein (260aa)
taurine-transporting AtPase (EC:3.6.3.36)
Energy-coupling factor transporter ATP-binding protein EcfA 2 n=59 Tax=Enterococcus RepID=ECFA2_ENTFA (db=UNIREF evalue=1.9e-19 bit_score=102.1 identity=30.0 coverage=87.6923076923077)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=229 evalue=3.7e-100)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=136 to=150 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA5_4_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3405..4469)
DNA (1065bp) protein (355aa)
glycine betaine ABC transporter periplasmic protein
Putative ABC transporter substrate binding protein n=1 Tax=Gordonia effusa NBRC 100432 RepID=H0QZB3_9ACTO (db=UNIREF evalue=3.7e-26 bit_score=124.8 identity=27.4 coverage=94.36619718309859)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=38 to=263 evalue=2.8e-42)
AMDSBA5_4_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4666..5520)
DNA (855bp) protein (285aa)
ABC transporter rbh
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Afipia sp. 1NLS2 RepID=D6V830_9BRAD (db=UNIREF evalue=3.3e-33 bit_score=147.9 identity=32.5 coverage=84.21052631578947)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
AMDSBA5_4_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5947..6588
DNA (642bp) protein (214aa)
Phosphoglycerate mutase n=2 Tax=Sulfobacillus acidophilus RepID=G8TSL7_9FIRM (db=UNIREF evalue=5.8e-67 bit_score=259.6 identity=65.5 coverage=93.92523364485982)
phosphoglycerate mutase
PG_MUTASE (db=PatternScan db_id=PS00175 from=9 to=18 evalue=0.0 interpro_id=IPR001345 interpro_description=Phosphoglycerate/bisphosphoglycerate mutase, active site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Phosphoglycerate mutase-like (db=superfamily db_id=SSF53254 from=4 to=204 evalue=4.0e-44)
AMDSBA5_4_8
unknown

Not on your lists

comp(6628..6924)
DNA (297bp) protein (99aa)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=93 evalue=1.7e-07)
AMDSBA5_4_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7126..8091
DNA (966bp) protein (322aa)
ABC transporter periplasmic protein
Cobalamin-binding protein n=2 Tax=Halobacterium salinarum RepID=BTUFA_HALS3 (db=UNIREF evalue=1.7e-17 bit_score=95.9 identity=25.9 coverage=94.72049689440993)
seg (db=Seg db_id=seg from=8 to=25)
"Helical backbone" metal receptor (db=superfamily db_id=SSF53807 from=54 to=311 evalue=1.5e-44)
AMDSBA5_4_10
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8498..9307
DNA (810bp) protein (270aa)
glycosyl transferase
Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9AFV4_METSM (db=UNIREF evalue=1.3e-12 bit_score=79.3 identity=26.4 coverage=76.66666666666667)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=3 to=225 evalue=2.6e-41)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=1 to=215 evalue=2.4e-39)
AMDSBA5_4_11
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

9408..10244
DNA (837bp) protein (279aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MKM8_9BURK (db=UNIREF evalue=8.1e-45 bit_score=186.4 identity=40.1 coverage=97.84946236559139)
Uncharacterized protein {ECO:0000313|EMBL:AFZ20701.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp.
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WLL8_9CYAN
AMDSBA5_4_12
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10241..11176)
DNA (936bp) protein (312aa)
glycosyltransferase
Putative glycosyltransferase n=1 Tax=Actinobacillus minor NM305 RepID=C5RYK2_9PAST (db=UNIREF evalue=3.1e-13 bit_score=81.6 identity=26.8 coverage=90.06410256410257)
seg (db=Seg db_id=seg from=227 to=238)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=308 evalue=5.5e-24)
AMDSBA5_4_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11186..12424)
DNA (1239bp) protein (413aa)
family 2 glycosyl transferase
Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YXS3_9SYNE (db=UNIREF evalue=6.0e-28 bit_score=131.0 identity=31.9 coverage=79.90314769975787)
coiled-coil (db=Coil db_id=coil from=170 to=191 evalue=NA)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=155 evalue=1.5e-27)
AMDSBA5_4_14
unknown

Not on your lists

comp(12421..12825)
DNA (405bp) protein (135aa)
12421..12825 - ( gc_cont=0.435)
AMDSBA5_4_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12843..14273)
DNA (1431bp) protein (477aa)
flagellar hook-associated 2 domain-containing protein
Flagellar hook-associated protein 2 n=2 Tax=Ralstonia RepID=E2SUN8_9RALS (db=UNIREF evalue=5.8e-27 bit_score=127.9 identity=27.8 coverage=84.69601677148847)
seg (db=Seg db_id=seg from=38 to=55)
seg (db=Seg db_id=seg from=67 to=81)
AMDSBA5_4_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14562..15725
DNA (1164bp) protein (388aa)
Putative Flagellin domain protein n=1 Tax=mine drainage metagenome RepID=E6PC23_9ZZZZ (db=UNIREF evalue=6.6e-29 bit_score=134.0 identity=29.6 coverage=93.29896907216495)
coiled-coil (db=Coil db_id=coil from=9 to=30 evalue=NA)
seg (db=Seg db_id=seg from=224 to=237)
seg (db=Seg db_id=seg from=200 to=213)
AMDSBA5_4_17
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15788..16963
DNA (1176bp) protein (392aa)
family 2 glycosyl transferase
Glycosyl transferase, family 2:Glycosyl transferase, group 1 n=1 Tax=Ralstonia eutropha JMP134 RepID=Q474T3_CUPPJ (db=UNIREF evalue=3.7e-27 bit_score=128.3 identity=30.6 coverage=68.36734693877551)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=12 to=256 evalue=1.3e-49)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=15 to=271 evalue=2.9e-40)
AMDSBA5_4_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17026..17868)
DNA (843bp) protein (281aa)
rfbD; dTDP-4-dehydrorhamnose reductase
dTDP-4-dehydrorhamnose reductase n=2 Tax=Sulfobacillus acidophilus RepID=G8TT34_9FIRM (db=UNIREF evalue=7.3e-70 bit_score=269.6 identity=49.8 coverage=95.72953736654804)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=258 evalue=2.8e-70)
(db=HMMPfam db_id=PF04321 from=1 to=265 evalue=3.6e-65 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
AMDSBA5_4_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17925..18263)
DNA (339bp) protein (113aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT35_9FIRM (db=UNIREF evalue=5.1e-22 bit_score=109.4 identity=50.0 coverage=92.92035398230088)
Nitrogenase accessory factor-like (db=superfamily db_id=SSF53146 from=3 to=110 evalue=9.0e-17 interpro_id=IPR003731 interpro_description=Dinitrogenase iron-molybdenum cofactor biosynthesis)
no description (db=Gene3D db_id=G3DSA:3.30.420.130 from=5 to=108 evalue=4.2e-11 interpro_id=IPR003731 interpro_description=Dinitrogenase iron-molybdenum cofactor biosynthesis)
AMDSBA5_4_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18279..19217)
DNA (939bp) protein (313aa)
beta-lactamase domain-containing protein rbh
Zn-dependent hydrolases, including glyoxylases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D4L4_PELTS (db=UNIREF evalue=1.4e-61 bit_score=242.3 identity=40.4 coverage=97.76357827476039)
seg (db=Seg db_id=seg from=86 to=100)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=246 evalue=6.1e-40)
AMDSBA5_4_21
unknown

Not on your lists

comp(19346..20584)
DNA (1239bp) protein (413aa)
seg (db=Seg db_id=seg from=274 to=285)
TPR-like (db=superfamily db_id=SSF48452 from=203 to=408 evalue=1.4e-15)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=14 to=74 evalue=1.7e-09 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
TPR-like (db=superfamily db_id=SSF48452 from=75 to=235 evalue=2.7e-09)
AMDSBA5_4_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20627..21586)
DNA (960bp) protein (320aa)
family 2 glycosyl transferase
Putative uncharacterized protein n=1 Tax=Gluconobacter morbifer G707 RepID=G6XFD7_9PROT (db=UNIREF evalue=2.6e-15 bit_score=88.6 identity=28.0 coverage=73.75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=248 to=270)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=8 to=257 evalue=1.4e-52)
AMDSBA5_4_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21573..22631)
DNA (1059bp) protein (353aa)
group 1 glycosyl transferase
Glycosyl transferase group 1 n=1 Tax=Burkholderia sp. H160 RepID=B5WG17_9BURK (db=UNIREF evalue=1.7e-15 bit_score=89.4 identity=29.7 coverage=76.77053824362606)
seg (db=Seg db_id=seg from=85 to=95)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=14 to=347 evalue=3.6e-49)
AMDSBA5_4_24
Nodularia spumigena, Nodularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(22721..24676)
DNA (1956bp) protein (652aa)
family 2 glycosyl transferase
Glycosyl transferase group 1 n=1 Tax=Methanocaldococcus infernus ME RepID=D5VQR9_METIM (db=UNIREF evalue=1.5e-20 bit_score=107.1 identity=26.8 coverage=54.75460122699386)
seg (db=Seg db_id=seg from=381 to=394)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=4 to=367 evalue=1.0e-59)
AMDSBA5_4_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24706..25818)
DNA (1113bp) protein (371aa)
group 1 glycosyl transferase
Glycosyl transferase, group 1 n=1 Tax=Burkholderia sp. TJI49 RepID=F0G9R5_9BURK (db=UNIREF evalue=2.3e-23 bit_score=115.5 identity=27.4 coverage=74.66307277628033)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=15 to=359 evalue=2.8e-56)
MANNOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF29 from=5 to=359 evalue=3.6e-52)
AMDSBA5_4_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25819..27027)
DNA (1209bp) protein (403aa)
teichoic-acid-transporting AtPase (EC:3.6.3.40)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=4 to=243 evalue=1.2e-99)
SIALIC ACID ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF2 from=4 to=243 evalue=1.2e-99)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=43 to=232 evalue=8.3e-44)
AMDSBA5_4_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27028..27936)
DNA (909bp) protein (303aa)
ABC transporter
ABC transporter
ABC-2 type transporter n=2 Tax=Sulfobacillus acidophilus RepID=G8TU57_9FIRM (db=UNIREF evalue=5.8e-97 bit_score=359.8 identity=62.1 coverage=89.43894389438944)
seg (db=Seg db_id=seg from=8 to=19)
AMDSBA5_4_28
Cyanothece sp. PCC 7424, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(28008..29393)
DNA (1386bp) protein (462aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KDP5_CYAP7 (db=UNIREF evalue=2.2e-23 bit_score=115.9 identity=23.8 coverage=96.75324675324676)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=175 to=204)
AMDSBA5_4_29
unknown

Not on your lists

comp(29409..29615)
DNA (207bp) protein (69aa)
29409..29615 - ( gc_cont=0.386)
AMDSBA5_4_30

Not on your lists

29666..30586
DNA (921bp) protein (307aa)
sulfur oxygenase reductase
sulfur oxygenase reductase
Sulfur oxygenase/reductase n=6 Tax=Archaea RepID=SOR_ACIAM (db=UNIREF evalue=4.8e-91 bit_score=340.1 identity=51.3 coverage=99.3485342019544)
Displaying items 1-30 of 148 in total

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