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PLM4_65_b1_redo_sep16_scaffold_3123

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3123_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..367
DNA (366bp) protein (122aa)
TadE-like protein Tax=Pseudomonas stutzeri RCH2 RepID=L0GMW7_PSEST
TadE-like protein
TadE-like protein {ECO:0000313|EMBL:AGA87137.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri RCH2.;"
PLM4_65_b1_redo_sep16_scaffold_3123_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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392..1627
DNA (1236bp) protein (412aa)
Response regulator receiver protein Tax=uncultured bacterium RepID=K2EA23_9BACT
histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_3123_3
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1633..3018
DNA (1386bp) protein (462aa)
Flp pilus assembly ATPase CpaF Tax=Janthinobacterium sp. CG3 RepID=UPI000348E8F3
type II secretion system protein E
Type II secretion system protein E {ECO:0000313|EMBL:ADW13888.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_b1_redo_sep16_scaffold_3123_4
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3024..3989
DNA (966bp) protein (322aa)
Pilus assembly protein bin=GWA2_Elusimicrobia_66_18 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
type II secretion system protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM4_65_b1_redo_sep16_scaffold_3123_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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4142..5077
DNA (936bp) protein (312aa)
secretion protein Tax=Gemmata obscuriglobus RepID=UPI00016C35FE
type II secretion system protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_3123_6
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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5092..6066
DNA (975bp) protein (325aa)
Tetratricopeptide TPR_2 repeat protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JFH0_ANAD2
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_65_b1_redo_sep16_scaffold_3123_7
CG_Mariprof_03, Zetaproteobacteria, Proteobacteria, Bacteria

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6201..7547
DNA (1347bp) protein (449aa)
AAA ATPase Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X1M0_DESRD
ATPase AAA
Tax=CG_Mariprof_03
PLM4_65_b1_redo_sep16_scaffold_3123_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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7599..8603
DNA (1005bp) protein (335aa)
YjbJ protein Tax=Bacillus RepID=E5W4T8_9BACI
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:CDM66843.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cwlQ; murein lytic transglycosylase CwlQ
PLM4_65_b1_redo_sep16_scaffold_3123_9
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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8646..9389
DNA (744bp) protein (248aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_b1_redo_sep16_scaffold_3123_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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9393..10463
DNA (1071bp) protein (357aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003761C1B
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:CDM64798.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
von Willebrand factor A
PLM4_65_b1_redo_sep16_scaffold_3123_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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10789..12828
DNA (2040bp) protein (680aa)
Putative Fe-S oxidoreductase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ16_CHLTF
Predicted Fe-S oxidoreductase {ECO:0000313|EMBL:CDM64395.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative Fe-S oxidoreductase
PLM4_65_b1_redo_sep16_scaffold_3123_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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13058..13264
DNA (207bp) protein (69aa)
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S21
PLM4_65_b1_redo_sep16_scaffold_3123_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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13404..14174
DNA (771bp) protein (257aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060, ECO:0000256|SAAS:SAAS00165062};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
5'/3'-nucleotidase SurE (EC:3.1.3.5)
5'-nucleotidase SurE Tax=uncultured Acidobacteria bacterium RepID=H5SFE8_9BACT
PLM4_65_b1_redo_sep16_scaffold_3123_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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14281..14898
DNA (618bp) protein (206aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase Tax=uncultured Acidobacteria bacterium RepID=H5SFE7_9BACT
PLM4_65_b1_redo_sep16_scaffold_3123_15
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

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15027..15668
DNA (642bp) protein (214aa)
Protein dedA, putative bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Streptophyta tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
Tax=CSP1_8_Deltaproteobacteria
PLM4_65_b1_redo_sep16_scaffold_3123_16

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15831..17324
DNA (1494bp) protein (498aa)
Membrane protein Tax=uncultured bacterium F39-01 RepID=I3VID7_9BACT
Membrane protein {ECO:0000313|EMBL:AFK79143.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium F39-01.;"
membrane protein
PLM4_65_b1_redo_sep16_scaffold_3123_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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17428..17916
DNA (489bp) protein (163aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM65933.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Displaying 17 items

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