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PLM4_65_b1_redo_sep16_scaffold_3978

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3978_1
unknown

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3..230
DNA (228bp) protein (76aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3978_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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557..1072
DNA (516bp) protein (172aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Peptide deformylase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIN4_CHLTF
peptide deformylase
PLM4_65_b1_redo_sep16_scaffold_3978_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1433..3025
DNA (1593bp) protein (531aa)
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:CDM64928.1}; EC=1.2.1.88 {ECO:0000313|EMBL:CDM64928.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
Delta-1-pyrroline-5 carboxylate dehydrogenase Tax=Clostridium ultunense Esp RepID=M1Z3X9_9CLOT
PLM4_65_b1_redo_sep16_scaffold_3978_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3223..4143
DNA (921bp) protein (307aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase Tax=uncultured Acidobacteria bacterium RepID=H5SEM9_9BACT
PLM4_65_b1_redo_sep16_scaffold_3978_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4133..5467
DNA (1335bp) protein (445aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Ribosomal RNA small subunit methyltransferase B Tax=uncultured Acidobacteria bacterium RepID=H5SCJ9_9BACT
rsmB; 16S rRNA (5-methyl-C967)-methyltransferase
PLM4_65_b1_redo_sep16_scaffold_3978_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5676..6341
DNA (666bp) protein (222aa)
Lipoprotein Tax=Bacillus cereus FRI-35 RepID=M4HBR9_BACCE
Uncharacterized protein {ECO:0000313|EMBL:CDM64931.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
lipoprotein
PLM4_65_b1_redo_sep16_scaffold_3978_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6400..7074
DNA (675bp) protein (225aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4F2_SPHTD
PLM4_65_b1_redo_sep16_scaffold_3978_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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7187..8758
DNA (1572bp) protein (524aa)
Outer membrane assembly lipoprotein YfiO Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHA6_CHLTF
Outer membrane assembly lipoprotein YfiO {ECO:0000313|EMBL:CDM64933.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
outer membrane assembly lipoprotein YfiO
PLM4_65_b1_redo_sep16_scaffold_3978_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8897..9400
DNA (504bp) protein (168aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64934.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_3978_10
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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9573..10595
DNA (1023bp) protein (341aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJA7_CHLTF
PLM4_65_b1_redo_sep16_scaffold_3978_trna_1
unknown

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10586..10657
DNA (72bp)
transferRNA Gln
PLM4_65_b1_redo_sep16_scaffold_3978_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10748..11695
DNA (948bp) protein (316aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJA6_CHLTF
PLM4_65_b1_redo_sep16_scaffold_3978_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


11875..12564
DNA (690bp) protein (230aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036D43A4
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L25
PLM4_65_b1_redo_sep16_scaffold_3978_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12577..13224
DNA (648bp) protein (216aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase Tax=Solibacter usitatus (strain Ellin6076) RepID=PTH_SOLUE
PLM4_65_b1_redo_sep16_scaffold_3978_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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13319..13756
DNA (438bp) protein (146aa)
30S ribosomal protein S6 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=RS6_ACIC5
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsF; 30S ribosomal protein S6
PLM4_65_b1_redo_sep16_scaffold_3978_15
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

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13883..14185
DNA (303bp) protein (101aa)
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsR; 30S ribosomal protein S18
Tax=BJP_IG2102_BRC1_58_13
PLM4_65_b1_redo_sep16_scaffold_3978_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


14221..14769
DNA (549bp) protein (183aa)
50S ribosomal protein L9 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJA2_CHLTF
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L9
PLM4_65_b1_redo_sep16_scaffold_3978_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

14909..15805
DNA (897bp) protein (299aa)
Primary replicative DNA helicase {ECO:0000313|EMBL:CDM64943.1}; EC=3.6.4.12 {ECO:0000313|EMBL:CDM64943.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
primary replicative DNA helicase (EC:3.6.1.-)
DNA helicase Tax=Orenia marismortui RepID=UPI0003824590
Displaying 18 items

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