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PLM4_65_b1_redo_sep16_scaffold_8551

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_8551_1
unknown

Not on your lists

comp(3..122)
DNA (120bp) protein (40aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_8551_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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783..1682
DNA (900bp) protein (300aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase bin=GWC2_Deltaproteobacteria_56_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
PLM4_65_b1_redo_sep16_scaffold_8551_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

1663..2397
DNA (735bp) protein (245aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
RNAse PH (EC:2.7.7.56)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003789099
PLM4_65_b1_redo_sep16_scaffold_8551_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

2612..3115
DNA (504bp) protein (168aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE83_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:CDM66496.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_8551_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3591..4415)
DNA (825bp) protein (275aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Multi-sensor signal transduction histidine kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NN6_SOLUE
multi-sensor signal transduction histidine kinase
PLM4_65_b1_redo_sep16_scaffold_8551_6
unknown

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comp(4375..4671)
DNA (297bp) protein (99aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_8551_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(4935..6350)
DNA (1416bp) protein (472aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
L-seryl-tRNA(Sec) selenium transferase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I009_CALAS
L-seryl-tRNA(Sec) selenium transferase
PLM4_65_b1_redo_sep16_scaffold_8551_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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6562..7206
DNA (645bp) protein (215aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV26_KORVE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_b1_redo_sep16_scaffold_8551_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7330..7536)
DNA (207bp) protein (69aa)
Cold shock protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFQ4_CHLTF
Cold shock protein {ECO:0000313|EMBL:CDM66551.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Cold shock protein
PLM4_65_b1_redo_sep16_scaffold_8551_10
Selenomonas sp. oral taxon 892, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(7843..8598)
DNA (756bp) protein (252aa)
Peptidase, M23 family Tax=Selenomonas sp. oral taxon 892 str. F0426 RepID=U2K063_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:ERJ91916.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. oral taxon 892 str. F0426.;"
peptidase M23B
PLM4_65_b1_redo_sep16_scaffold_8551_11
unknown

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comp(8951..9160)
DNA (210bp) protein (70aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_8551_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9189..9956)
DNA (768bp) protein (256aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036FB88E
Uncharacterized protein {ECO:0000313|EMBL:CDM66553.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_8551_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9971..10660)
DNA (690bp) protein (230aa)
Putative zinc-finger {ECO:0000313|EMBL:CDM66554.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Displaying 13 items

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