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PLM4_65_b1_redo_sep16_scaffold_12251

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_12251_1
unknown

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comp(2..130)
DNA (129bp) protein (43aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_12251_2
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

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209..625
DNA (417bp) protein (139aa)
Uncharacterized protein bin=GWF2_Lentisphaerae_49_21 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=RBG_16_Chloroflexi_54_18_curated
PLM4_65_b1_redo_sep16_scaffold_12251_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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643..1830
DNA (1188bp) protein (396aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SE3_SOLUE
PLM4_65_b1_redo_sep16_scaffold_12251_4
unknown

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1879..2676
DNA (798bp) protein (266aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_12251_5
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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comp(2727..3653)
DNA (927bp) protein (309aa)
hypothetical protein Tax=Cycloclasticus pugetii RepID=UPI00037020EF
beta-lactamase
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_65_b1_redo_sep16_scaffold_12251_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3774..4427)
DNA (654bp) protein (218aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CDM66471.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CDM66471.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase Tax=Desmospora sp. 8437 RepID=F5SHY2_9BACL
PLM4_65_b1_redo_sep16_scaffold_12251_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4512..5381
DNA (870bp) protein (290aa)
5'-Nucleotidase domain protein Tax=Saprospira grandis (strain Lewin) RepID=H6L7I9_SAPGL
Uncharacterized protein {ECO:0000313|EMBL:GAO44903.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
5'-nucleotidase
PLM4_65_b1_redo_sep16_scaffold_12251_8
Capnocytophaga cynodegmi, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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5378..6355
DNA (978bp) protein (326aa)
metallophosphoesterase Tax=Capnocytophaga cynodegmi RepID=UPI0003776C7A
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:CEN36308.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga cynodegmi.;"
calcineurin-like phosphoesterase
PLM4_65_b1_redo_sep16_scaffold_12251_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6557..7345
DNA (789bp) protein (263aa)
ribose-5-phosphate isomerase (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:CDM66655.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_12251_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7496..8407
DNA (912bp) protein (304aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4); K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4] bin=CNBR_ACIDO species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dra; Deoxyribose-phosphate aldolase
PLM4_65_b1_redo_sep16_scaffold_12251_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(8427..8678)
DNA (252bp) protein (84aa)
Beta-lactamase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISZ8_KORVE
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ABF40002.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Displaying 11 items

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