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PLM4_65_b1_redo_sep16_scaffold_4651

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4651_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(212..811)
DNA (600bp) protein (200aa)
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:CDM67103.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Thiol-disulfide oxidoreductase bin=GWA2_Ignavibacteria_55_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
redoxin domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_4651_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(812..1417)
DNA (606bp) protein (202aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Melioribacter roseus P3M RepID=I7A429_MELRP bin=RAAC39 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
Peroxiredoxin {ECO:0000313|EMBL:CDM67104.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
PLM4_65_b1_redo_sep16_scaffold_4651_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(1681..2103)
DNA (423bp) protein (141aa)
Predicted membrane protein {ECO:0000313|EMBL:CDM64318.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Vitamin K epoxide reductase bin=GWA1_ZB2_49_26 species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
vitamin K epoxide reductase
PLM4_65_b1_redo_sep16_scaffold_4651_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(2239..2937)
DNA (699bp) protein (233aa)
Protein-disulfide isomerase Tax=candidate division WWE3 bacterium RAAC2_WWE3_1 RepID=V5RW79_9BACT
Protein-disulfide isomerase {ECO:0000313|EMBL:CDM64317.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Protein-disulfide isomerase
PLM4_65_b1_redo_sep16_scaffold_4651_5
unknown

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comp(2989..3471)
DNA (483bp) protein (161aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4651_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3514..4212)
DNA (699bp) protein (233aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Phosphoribosylformylglycinamidine synthase 1 Tax=uncultured Acidobacteria bacterium RepID=H5SIT5_9BACT
phosphoribosylformylglycinamidine synthase I
PLM4_65_b1_redo_sep16_scaffold_4651_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(4209..4454)
DNA (246bp) protein (82aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
phosphoribosylformylglycinamidine synthase PurS protein (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase, PurS subunit Tax=Caenispirillum salinarum AK4 RepID=K9GQR4_9PROT
PLM4_65_b1_redo_sep16_scaffold_4651_8
Thermococcus onnurineus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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4601..5011
DNA (411bp) protein (137aa)
Hypothetical membrane protein, conserved Tax=Thermococcus onnurineus (strain NA1) RepID=B6YUV6_THEON
hypothetical protein
Hypothetical membrane protein, conserved {ECO:0000313|EMBL:ACJ16142.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus onnurineus (strain NA1).;"
PLM4_65_b1_redo_sep16_scaffold_4651_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(5133..6431)
DNA (1299bp) protein (433aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Adenylosuccinate lyase Tax=uncultured Acidobacteria bacterium RepID=H5SIT3_9BACT
adenylosuccinate lyase
PLM4_65_b1_redo_sep16_scaffold_4651_10
unknown

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comp(6588..7043)
DNA (456bp) protein (152aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4651_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7363..8187)
DNA (825bp) protein (275aa)
Beta-lactamase domain protein Tax=uncultured Acidobacteria bacterium RepID=H5SIT2_9BACT
Metal-dependent hydrolase, beta-lactamase superfamily I {ECO:0000313|EMBL:CDM67110.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
beta-lactamase superfamily metal-dependent hydrolase
PLM4_65_b1_redo_sep16_scaffold_4651_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8370..8684)
DNA (315bp) protein (105aa)
Putative uncharacterized protein bin=GWB2_Geobacter-like_52_12 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25626.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_b1_redo_sep16_scaffold_4651_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(8783..9205)
DNA (423bp) protein (141aa)
id=5223968 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_4651_14
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9503..10207
DNA (705bp) protein (235aa)
hypothetical protein Tax=Bacillus sp. 123MFChir2 RepID=UPI00038084C7
Uncharacterized protein {ECO:0000313|EMBL:GAE88703.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
Abortive infection protein
PLM4_65_b1_redo_sep16_scaffold_4651_15
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(10240..10797)
DNA (558bp) protein (186aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021W1_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84264.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_4651_16
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(11030..13210)
DNA (2181bp) protein (727aa)
prolyl oligopeptidase (EC:3.4.21.26)
Prolyl oligopeptidase Tax=Fibrisoma limi BUZ 3 RepID=I2GFJ6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJH69660.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
PLM4_65_b1_redo_sep16_scaffold_4651_17
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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comp(13309..14049)
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=Nitrospina gracilis 3/211 RepID=M1YWU0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCQ90131.1}; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4651_18
unknown

Not on your lists

comp(14241..14606)
DNA (366bp) protein (122aa)
hypothetical protein Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B39FCA
Displaying 18 items

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