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PLM4_65_b1_redo_sep16_scaffold_3977

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3977_1
Xylanimonas cellulosilytica, Xylanimonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..357
DNA (357bp) protein (119aa)
beta-galactosidase Tax=Ruania albidiflava RepID=UPI0003B3E565
glycoside hydrolase family 35
Glycoside hydrolase family 35 {ECO:0000313|EMBL:ACZ31679.1}; species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Xylanimonas.;" source="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990; / XIL07).;"
PLM4_65_b1_redo_sep16_scaffold_3977_2
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

423..878
DNA (456bp) protein (152aa)
Putative uncharacterized protein Tax=Alcanivorax sp. DG881 RepID=B4WXB1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGD64541.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. 19-m-6.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3977_3
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(903..1811)
DNA (909bp) protein (303aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000382A249
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL81224.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM4_65_b1_redo_sep16_scaffold_3977_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1808..3274)
DNA (1467bp) protein (489aa)
M20 family peptidase bin=GWC2_Methylomirabilis_70_16 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dapE4; M20 family peptidase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_3977_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3333..5405)
DNA (2073bp) protein (691aa)
Oligopeptide transporter OPT bin=GWA2_Ignavibacteriae_54_16_partial species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
oligopeptide transporter OPT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3977_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

5827..7275
DNA (1449bp) protein (483aa)
M20 family peptidase bin=GWC2_Methylomirabilis_70_16 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase M20
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3977_7
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7295..8152
DNA (858bp) protein (286aa)
Uncharacterized protein Tax=Alishewanella agri BL06 RepID=I8UCY9_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:EIW89833.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella agri BL06.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3977_8
unknown

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8479..8943
DNA (465bp) protein (155aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3977_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8983..10542)
DNA (1560bp) protein (520aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3977_10
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10609..10899)
DNA (291bp) protein (97aa)
HNH endonuclease Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7D0_ANADF
HNH endonuclease
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
PLM4_65_b1_redo_sep16_scaffold_3977_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11241..11582)
DNA (342bp) protein (114aa)
HNH endonuclease bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3977_12
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11675..12448)
DNA (774bp) protein (258aa)
Menaquinol oxidoreductase complex Cbc6, lipoprotein cytochrome c subunit bin=GWD2_Desulfuromonadales_54_10 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
cbcR; menaquinol oxidoreductase complex Cbc6, lipoprotein cytochrome c subunit
Menaquinol oxidoreductase complex Cbc6, lipoprotein cytochrome c subunit {ECO:0000313|EMBL:ABB30784.2}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_b1_redo_sep16_scaffold_3977_13
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12424..12834)
DNA (411bp) protein (137aa)
Uncharacterized protein Tax=Geobacter sp. (strain M21) RepID=C6E9M9_GEOSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT20129.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
PLM4_65_b1_redo_sep16_scaffold_3977_14
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12831..13451)
DNA (621bp) protein (207aa)
Cytochrome b/b6 domain protein bin=GWB2_Pelobacter_53_15 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
cytochrome b/b6 domain protein
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_65_b1_redo_sep16_scaffold_3977_15
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13835..14995)
DNA (1161bp) protein (387aa)
Menaquinol oxidoreductase complex Cbc6, cytochrome c subunit, putative Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EGA3_GEOBB
cytochrome c
Menaquinol oxidoreductase complex Cbc6, cytochrome c subunit, putative {ECO:0000313|EMBL:ACH41016.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
PLM4_65_b1_redo_sep16_scaffold_3977_16
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14946..16829)
DNA (1884bp) protein (628aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E741_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD94921.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
PLM4_65_b1_redo_sep16_scaffold_3977_17
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

17009..17407
DNA (399bp) protein (133aa)
Ferric uptake regulator family protein bin=GWB2_Elusimicrobia_63_16 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Elusimicrobia_63_16 organism_group=Elusimicrobia
ferric uptake regulator family protein
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_3977_18
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17455..17931
DNA (477bp) protein (159aa)
Ferritin Dps family protein Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2SX99_BURPP
ferritin Dps family protein
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
PLM4_65_b1_redo_sep16_scaffold_3977_19
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

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comp(17928..18527)
DNA (600bp) protein (200aa)
Cytochrome c family protein Tax=uncultured Acidobacteria bacterium RepID=H5SQ34_9BACT
Cytochrome c family protein {ECO:0000313|EMBL:BAL58270.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
cytochrome c family protein
PLM4_65_b1_redo_sep16_scaffold_3977_20
unknown

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18697..19116
DNA (420bp) protein (140aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3977_21
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(19125..20900)
DNA (1776bp) protein (592aa)
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y631_THEBD
cysteine ABC transporter permease/ATP-binding protein CydC
Tax=CG_Anaero_04
PLM4_65_b1_redo_sep16_scaffold_3977_22
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(20897..22660)
DNA (1764bp) protein (588aa)
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DN92_DESRL
cysteine ABC transporter permease/ATP-binding protein CydD
Tax=CG_Anaero_02
PLM4_65_b1_redo_sep16_scaffold_3977_23
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(22673..23686)
DNA (1014bp) protein (338aa)
Cytochrome d ubiquinol oxidase, subunit II {ECO:0000313|EMBL:ABX06394.1}; EC=3.1.3.1 {ECO:0000313|EMBL:ABX06394.1};; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
Cytochrome d ubiquinol oxidase, subunit II Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B7B1_HERA2
cytochrome d ubiquinol oxidase subunit II
PLM4_65_b1_redo_sep16_scaffold_3977_24
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(23700..25100)
DNA (1401bp) protein (467aa)
Cytochrome bd ubiquinol oxidase subunit I Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B7B2_HERA2
cytochrome bd ubiquinol oxidase subunit I
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:ABX06395.1}; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
PLM4_65_b1_redo_sep16_scaffold_3977_25
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(25240..25683)
DNA (444bp) protein (148aa)
OsmC family protein bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
OsmC family protein
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_65_b1_redo_sep16_scaffold_3977_26
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

25816..26493
DNA (678bp) protein (226aa)
Glutaredoxin-like domain protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C580_SPHTD
glutaredoxin-like domain-containing protein
Glutaredoxin-like domain protein {ECO:0000313|EMBL:ACZ39397.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM4_65_b1_redo_sep16_scaffold_3977_27
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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26521..27366
DNA (846bp) protein (282aa)
RNA polymerase, sigma subunit, ECF family Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IP36_ANADE
sigma-24 FecI-like protein
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:ABC80569.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM4_65_b1_redo_sep16_scaffold_3977_28
unknown

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27486..27932
DNA (447bp) protein (149aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3977_29

Not on your lists

comp(28199..29119)
DNA (921bp) protein (307aa)
Alpha/beta hydrolase Tax=uncultured microorganism RepID=K0J6M7_9ZZZZ
Alpha/beta hydrolase {ECO:0000313|EMBL:BAM62576.1}; species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
alpha/beta hydrolase
PLM4_65_b1_redo_sep16_scaffold_3977_30
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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29609..29776
DNA (168bp) protein (56aa)
3-Cys thioredoxin peroxidase (EC:1.11.1.15)
3-Cys thioredoxin peroxidase bin=GWF2_Lentisphaerae_50_93 species=Methanolobus psychrophilus genus=Methanolobus taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=GWF2_Lentisphaerae_50_93_curated
Displaying items 1-30 of 38 in total

View Taxonomy