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PLM4_65_b1_redo_sep16_scaffold_876

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_876_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(2..154)
DNA (153bp) protein (51aa)
Aspartate--tRNA ligase Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ABG1_THEID
aspartyl-tRNA synthetase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists


comp(147..1400)
DNA (1254bp) protein (418aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000255|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00127}; Short=HisRS {ECO:0000255|HAMAP-Rule:MF_00127};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Histidine--tRNA ligase Tax=Solibacter usitatus (strain Ellin6076) RepID=SYH_SOLUE
PLM4_65_b1_redo_sep16_scaffold_876_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1397..1915)
DNA (519bp) protein (173aa)
Uncharacterized protein Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T4U3_THEA1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_876_4
Streptomyces sp. MUSC164, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2079..3440
DNA (1362bp) protein (454aa)
Glycoprotein endo-alpha-1,2-mannosidase (EC:3.2.1.130)
Glycoprotein endo-alpha-1,2-mannosidase Tax=Streptomyces davawensis JCM 4913 RepID=K4QVU5_9ACTO
Alpha-mannosidase {ECO:0000313|EMBL:KKA38613.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MUSC164.;"
PLM4_65_b1_redo_sep16_scaffold_876_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3314..4603)
DNA (1290bp) protein (430aa)
Uncharacterized protein (Fragment) Tax=uncultured bacterium RepID=K1XC50_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_876_6
unknown

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4701..5897
DNA (1197bp) protein (399aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_876_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(5914..7521)
DNA (1608bp) protein (536aa)
hypothetical protein bin=CNBR_ACIDO species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_876_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7651..9036)
DNA (1386bp) protein (462aa)
Putative uncharacterized protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5URL2_ROSS1
glycosyl transferase family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9092..10156)
DNA (1065bp) protein (355aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_10
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(10323..11381)
DNA (1059bp) protein (353aa)
Uncharacterized protein bin=GWA2_Elusimicrobia_69_24 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
PLM4_65_b1_redo_sep16_scaffold_876_11
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(11434..12750)
DNA (1317bp) protein (439aa)
sulfatase family protein (EC:3.1.6.-)
hypothetical protein Tax=Dyadobacter beijingensis RepID=UPI00037EB59F
Tax=RBG_13_Planctomycetes_62_9_curated
PLM4_65_b1_redo_sep16_scaffold_876_12
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

12928..14355
DNA (1428bp) protein (476aa)
sulfatase bin=RBG_19FT_COMBO_GAL15_69_19 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
sulfatase
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM4_65_b1_redo_sep16_scaffold_876_13
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

14473..16113
DNA (1641bp) protein (547aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
Delta-1-pyrroline-5-carboxylate dehydrogenase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC88_GEMAT
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_876_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16115..17329)
DNA (1215bp) protein (405aa)
Uncharacterized protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BWT4_METCG
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(17353..17907)
DNA (555bp) protein (185aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dcd; Deoxycytidine triphosphate deaminase (dCTP deaminase) (EC:3.5.4.13)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_16
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17982..18860)
DNA (879bp) protein (293aa)
Pirin-like protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BQ27_9GAMM
Pirin-like protein {ECO:0000313|EMBL:EAR22182.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
pirin domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_876_17
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18874..19326)
DNA (453bp) protein (151aa)
DoxX family protein Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8EYC3_STRRM
DoxX family protein {ECO:0000313|EMBL:ELQ84503.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimosus ATCC 10970.;"
DoxX family protein
PLM4_65_b1_redo_sep16_scaffold_876_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19450..19830
DNA (381bp) protein (127aa)
Amb8 Tax=Sorangium cellulosum RepID=A1YBS3_SORCE
Amb8 {ECO:0000313|EMBL:ABK32276.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (Polyangium cellulosum).;"
regulatory protein
PLM4_65_b1_redo_sep16_scaffold_876_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19861..20277)
DNA (417bp) protein (139aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F2F7_ACIC5
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20291..21166)
DNA (876bp) protein (292aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha Tax=uncultured bacterium 282 RepID=E3T644_9BACT
succinyl-CoA synthetase, alpha subunit
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21163..22338)
DNA (1176bp) protein (392aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
malate--CoA ligase subunit beta Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003613BED
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22364..23113)
DNA (750bp) protein (250aa)
Peptidyl-prolyl cis-trans isomerase Tax=Cystobacter fuscus DSM 2262 RepID=S9Q4X7_9DELT
FKBP-type peptidylprolyl cis-trans isomerase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_23
Alcanivorax jadensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23226..24569
DNA (1344bp) protein (448aa)
Uncharacterized protein Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7SYQ8_STEMA
Uncharacterized protein {ECO:0000313|EMBL:KGD62318.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax jadensis T9.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_876_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

24580..26697
DNA (2118bp) protein (706aa)
hypothetical protein Tax=Alicyclobacillus pohliae RepID=UPI000380E5C8
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_25
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

26694..27770
DNA (1077bp) protein (359aa)
response regulator receiver protein bin=bin3_NC10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

27852..28466
DNA (615bp) protein (205aa)
Succinate dehydrogenase subunit C Tax=Holophaga foetida DSM 6591 RepID=H1NWN6_9BACT
sdhC; succinate dehydrogenase, cytochrome b subunit
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_27
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

28477..30390
DNA (1914bp) protein (638aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase subunit A Tax=Holophaga foetida DSM 6591 RepID=H1NWN5_9BACT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_28
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

30387..31175
DNA (789bp) protein (263aa)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NNJ4_ROSCS
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_876_29
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

31422..32081
DNA (660bp) protein (220aa)
Amino acid-binding ACT domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CP2_SOLUE
amino acid-binding ACT domain-containing protein
Amino acid-binding ACT domain protein {ECO:0000313|EMBL:ABJ81174.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_876_30
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(32092..32745)
DNA (654bp) protein (218aa)
hypothetical protein bin=CNBR_ACIDO species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying 30 items

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