ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_1245

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1245_1
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..745)
DNA (744bp) protein (248aa)
hypothetical protein Tax=Curtobacterium flaccumfaciens RepID=UPI0003669277
Uncharacterized protein {ECO:0000313|EMBL:ESQ11961.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
family 5 extracellular solute-binding protein
PLM4_65_b1_redo_sep16_scaffold_1245_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(764..1984)
DNA (1221bp) protein (407aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
export ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1245_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1995..2750)
DNA (756bp) protein (252aa)
Putative transporter subunit: ATP-binding component of ABC superfamily Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN85_9BACT
ybbA; transporter subunit: ATP-binding component of ABC superfamily
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1245_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2756..4108)
DNA (1353bp) protein (451aa)
Efflux transporter, RND family, MFP subunit bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
secretion protein HlyD
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_1245_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(4264..5934)
DNA (1671bp) protein (557aa)
outer membrane protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
outer membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_1245_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(6233..9496)
DNA (3264bp) protein (1088aa)
Uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1245_7
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

9753..10262
DNA (510bp) protein (170aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EAX47240.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EAX47240.1};; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRR9_9FIRM
PLM4_65_b1_redo_sep16_scaffold_1245_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10263..11174)
DNA (912bp) protein (304aa)
N-acetylmuramic acid 6-phosphate etherase bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
murQ; N-acetylmuramic acid-6-phosphate etherase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_1245_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11171..11545)
DNA (375bp) protein (125aa)
Cytidine deaminase {ECO:0000313|EMBL:CDM65507.1}; EC=3.5.4.5 {ECO:0000313|EMBL:CDM65507.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFE4_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1245_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11578..12408)
DNA (831bp) protein (277aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003785705
purine nucleoside phosphorylase
PLM4_65_b1_redo_sep16_scaffold_1245_11
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(12405..13661)
DNA (1257bp) protein (419aa)
Na+ dependent nucleoside transporter Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM43_KORVE
Na+ dependent nucleoside transporter
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1245_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13679..14983)
DNA (1305bp) protein (435aa)
Thymidine phosphorylase {ECO:0000313|EMBL:CDM65503.1}; EC=2.4.2.4 {ECO:0000313|EMBL:CDM65503.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Pyrimidine-nucleoside phosphorylase Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D8T6_SINAD
pyrimidine-nucleoside phosphorylase
PLM4_65_b1_redo_sep16_scaffold_1245_13
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(14980..15312)
DNA (333bp) protein (111aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM4_65_b1_redo_sep16_scaffold_1245_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

15552..16538
DNA (987bp) protein (329aa)
Helix-turn-helix transcriptional regulator, putative Tax=Geobacter sulfurreducens RepID=D7AF24_GEOSK
transcriptional regulator
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1245_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

16540..16917
DNA (378bp) protein (126aa)
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase Tax=Chthonomonas calidirosea T49 RepID=S0EV12_9BACT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1245_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

16914..17756
DNA (843bp) protein (281aa)
proline dehydrogenase (EC:1.5.99.8)
Proline dehydrogenase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SEC1_RHOMR
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1245_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

17838..18890
DNA (1053bp) protein (351aa)
Alcohol dehydrogenase GroES domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029L9_SOLUE
alcohol dehydrogenase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1245_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

18887..19939
DNA (1053bp) protein (351aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZFZ0_TERRK
theronine dehydrogenase-like Zn-dependent dehydrogenase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1245_19
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20003..20335)
DNA (333bp) protein (111aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Uncharacterized protein Tax=Plesiocystis pacifica SIR-1 RepID=A6GBU3_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EDM76616.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
PLM4_65_b1_redo_sep16_scaffold_1245_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20482..20682)
DNA (201bp) protein (67aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1245_21
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(20832..22805)
DNA (1974bp) protein (658aa)
alpha-L-arabinofuranosidase; K01209 alpha-N-arabinofuranosidase [EC:3.2.1.55] bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
alpha-N-arabinofuranosidase (EC:3.2.1.55)
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM4_65_b1_redo_sep16_scaffold_1245_22
RLO_PLX_64_10, Bacteria

Not on your lists

22978..23472
DNA (495bp) protein (165aa)
RNA polymerase sigma factor Tax=Mobiluncus curtisii RepID=D6ZJ10_MOBCV
rpoE; RNA polymerase sigma factor RpoE
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_1245_23
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

23469..24194
DNA (726bp) protein (242aa)
Putative transmembrane anti-sigma factor Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B0P8_STRRD
transmembrane anti-sigma factor
Tax=RBG_16_Actinobacteria_67_10_curated
PLM4_65_b1_redo_sep16_scaffold_1245_24
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24194..25486
DNA (1293bp) protein (431aa)
hypothetical protein Tax=Hymenobacter aerophilus RepID=UPI0003612649
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ98154.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
PLM4_65_b1_redo_sep16_scaffold_1245_25
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

25674..26795
DNA (1122bp) protein (374aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Tax=Leptonema illini DSM 21528 RepID=H2CLE5_9LEPT
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein {ECO:0000313|EMBL:EHQ04556.1}; species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1245_26
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(26814..27623)
DNA (810bp) protein (270aa)
Putative uncharacterized protein Tax=Hylemonella gracilis ATCC 19624 RepID=F3KRK7_9BURK
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
PLM4_65_b1_redo_sep16_scaffold_1245_27
Streptomyces auratus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27623..28762)
DNA (1140bp) protein (380aa)
ECF subfamily RNA polymerase sigma-24 subunit Tax=Streptomyces auratus AGR0001 RepID=J1RHB0_9ACTO
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EJJ03729.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces auratus AGR0001.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1245_28
Rhodococcus sp. EsD8, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28770..29141)
DNA (372bp) protein (124aa)
DGPFAETKE family protein Tax=Rhodococcus sp. EsD8 RepID=N1MEG1_9NOCA
DGPFAETKE family protein {ECO:0000313|EMBL:CCW15174.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. EsD8.;"
DGPFAETKE family protein
PLM4_65_b1_redo_sep16_scaffold_1245_29
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(29214..31406)
DNA (2193bp) protein (731aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAJ3_CONWI
Uncharacterized protein {ECO:0000313|EMBL:GAN33115.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
PLM4_65_b1_redo_sep16_scaffold_1245_30
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31619..32170
DNA (552bp) protein (184aa)
Protocatechuate 3,4-dioxygenase beta subunit Tax=Singulisphaera acidiphila RepID=L0DHQ7_SINAD
protocatechuate 3,4-dioxygenase subunit beta
Protocatechuate 3,4-dioxygenase beta subunit {ECO:0000313|EMBL:AGA28221.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 1-30 of 35 in total

View Taxonomy