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PLM4_65_b1_redo_sep16_scaffold_1311

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1311_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

2..1360
DNA (1359bp) protein (453aa)
Response regulator Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AMC5_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
response regulator
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1311_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

1369..1968
DNA (600bp) protein (200aa)
Peptidase, zinc-dependent Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YU3_SOLUE
peptidase, zinc-dependent
Peptidase, zinc-dependent {ECO:0000313|EMBL:ABJ85172.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_1311_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2191..3258
DNA (1068bp) protein (356aa)
tRNA-specific 2-thiouridylase MnmA Tax=Geobacter sulfurreducens RepID=MNMA_GEOSL
thiouridylase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1311_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3255..3962)
DNA (708bp) protein (236aa)
rnc; ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] bin=CNBR_ACIDO species=unknown genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rnc; ribonuclease III
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1311_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3959..6049)
DNA (2091bp) protein (697aa)
protein serine/threonine phosphatase bin=CNBR_ACIDO species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
stage II sporulation E family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1311_6

Not on your lists

6146..6784
DNA (639bp) protein (213aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003736814
Uncharacterized protein {ECO:0000313|EMBL:KKN31359.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
general secretion pathway protein C
PLM4_65_b1_redo_sep16_scaffold_1311_7
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

6864..8000
DNA (1137bp) protein (379aa)
cystathionine gamma-lyase (EC:2.5.1.48)
Cystathionine gamma-lyase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHZ5_CHLTF
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_1311_8
Metallosphaera sedula, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(7997..8314)
DNA (318bp) protein (106aa)
CutA1 divalent ion tolerance protein Tax=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) RepID=A4YHJ4_METS5
CutA1 divalent ion tolerance protein
CutA1 divalent ion tolerance protein {ECO:0000313|EMBL:ABP95896.1}; species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Metallosphaera.;" source="Metallosphaera sedula (strain ATCC 51363 / DSM 5348).;"
PLM4_65_b1_redo_sep16_scaffold_1311_9
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(8311..8712)
DNA (402bp) protein (134aa)
Putative uncharacterized protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UW63_ROSS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ90866.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM4_65_b1_redo_sep16_scaffold_1311_10

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8872..9279
DNA (408bp) protein (136aa)
Marine sediment metagenome DNA, contig: S06H3_L06432 {ECO:0000313|EMBL:GAI02434.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
id=4696313 bin=GWC2_Clostridiales_40_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
PLM4_65_b1_redo_sep16_scaffold_1311_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

9378..9668
DNA (291bp) protein (97aa)
septum formation initiator; K05589 cell division protein FtsB bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
septum formation initiator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_1311_12
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9798..10076
DNA (279bp) protein (93aa)
Transcriptional dual regulator HU-beta bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hupB; transcriptional dual regulator HU-beta
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
PLM4_65_b1_redo_sep16_scaffold_1311_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10206..13055
DNA (2850bp) protein (950aa)
AMP-dependent synthetase and ligase bin=GWC2_Methylomirabilis_70_24 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_b1_redo_sep16_scaffold_1311_14
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

13063..14043
DNA (981bp) protein (327aa)
threonine dehydratase (EC:4.3.1.19)
Threonine dehydratase Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F5F6_VERMA
Tax=RBG_16_Chloroflexi_56_8_curated
PLM4_65_b1_redo_sep16_scaffold_1311_15
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14040..14936
DNA (897bp) protein (299aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDW6_RHOM4
Uncharacterized protein {ECO:0000313|EMBL:AKF07869.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1311_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14949..16514)
DNA (1566bp) protein (522aa)
Peptidase S10, serine carboxypeptidase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3D4_GEOUR bin=16ft_combo_ws3_JS1 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Carboxypeptidase-related protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_1311_17
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

16569..17558
DNA (990bp) protein (330aa)
Pseudouridine synthase, RluA family Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QZG4_ISOPI
RluA family pseudouridine synthase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1311_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17600..19522
DNA (1923bp) protein (641aa)
prolyl oligopeptidase family protein (EC:3.4.-.-)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase Tax=Rheinheimera sp. A13L RepID=F7NZ42_9GAMM bin=16ft_combo_ws3_JS1 species=Rheinheimera sp. A13L genus=Rheinheimera taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_1311_19
unknown

Not on your lists

comp(19582..19953)
DNA (372bp) protein (124aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1311_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

20031..21080
DNA (1050bp) protein (350aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1311_21
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21077..21649
DNA (573bp) protein (191aa)
Metal dependent phosphohydrolase Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IG36_ANADE
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABC83545.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM4_65_b1_redo_sep16_scaffold_1311_22
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21659..22642
DNA (984bp) protein (328aa)
Potassium uptake protein, TrkA family bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
TrkA-N domain-containing protein
Tax=RBG_16_Deltaproteobacteria_71_12_curated
PLM4_65_b1_redo_sep16_scaffold_1311_23
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(22639..23478)
DNA (840bp) protein (280aa)
Putative membrane protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDZ7_CHLTF
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AEP11059.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_1311_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(23554..25971)
DNA (2418bp) protein (806aa)
Macrolide transporter ATP-binding /permease protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QSA7_9CYAN
macrolide transporter ATP-binding/permease protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1311_25
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

26080..27018
DNA (939bp) protein (313aa)
chorismate synthase Tax=Thermus islandicus RepID=UPI0003B35646
aroC1; chorismate synthase
AroC1 chorismate synthase {ECO:0000313|EMBL:AEG33292.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus (strain SG0.5JP17-16).;"
PLM4_65_b1_redo_sep16_scaffold_1311_26
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(26897..27751)
DNA (855bp) protein (285aa)
Rhodanese domain protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NG67_ROSCS
rhodanese domain-containing protein
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM4_65_b1_redo_sep16_scaffold_1311_27
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(27763..28566)
DNA (804bp) protein (268aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1311_28
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

28671..28997
DNA (327bp) protein (109aa)
Ferredoxin, 2Fe-2S Tax=Nitrospina gracilis 3/211 RepID=M1YXQ5_9BACT
ferredoxin
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_65_b1_redo_sep16_scaffold_1311_29
unknown

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comp(29080..29442)
DNA (363bp) protein (121aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1311_30
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

29541..30101
DNA (561bp) protein (187aa)
Tax=RBG_16_Actinobacteria_67_10_curated
Displaying items 1-30 of 46 in total

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