ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_1490

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1490_1
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

3..350
DNA (348bp) protein (116aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036D4D9F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW70826.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
PLM4_65_b1_redo_sep16_scaffold_1490_2
Shewanella sp. YQH10, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

410..1975
DNA (1566bp) protein (522aa)
Peptidase S10, serine carboxypeptidase Tax=gamma proteobacterium NOR5-3 RepID=B8KL70_9GAMM
Carboxypeptidase {ECO:0000313|EMBL:KFZ37212.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. YQH10.;"
peptidase S10 serine carboxypeptidase
PLM4_65_b1_redo_sep16_scaffold_1490_3
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2013..3611)
DNA (1599bp) protein (533aa)
Carboxylic ester hydrolase {ECO:0000256|RuleBase:RU361235}; EC=3.1.1.- {ECO:0000256|RuleBase:RU361235};; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein Tax=Spirosoma luteum RepID=UPI0003650A87
carboxylesterase
PLM4_65_b1_redo_sep16_scaffold_1490_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3669..4112
DNA (444bp) protein (148aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACP9_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40276.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM4_65_b1_redo_sep16_scaffold_1490_5
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

4168..6840
DNA (2673bp) protein (891aa)
Serine/threonine protein kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UH4_SOLUE
serine/threonine protein kinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM4_65_b1_redo_sep16_scaffold_1490_6
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(6845..8044)
DNA (1200bp) protein (400aa)
Membrane protein involved in aromatic hydrocarbon degradation Tax=Melioribacter roseus (strain P3M) RepID=I7A2V0_MELRP
membrane protein involved in aromatic hydrocarbon degradation
Membrane protein involved in aromatic hydrocarbon degradation {ECO:0000313|EMBL:AFN74261.1}; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
PLM4_65_b1_redo_sep16_scaffold_1490_7
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8086..8514)
DNA (429bp) protein (143aa)
hypothetical protein Tax=Thioalkalivibrio RepID=UPI000362A680
PilT domain-containing protein
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM4_65_b1_redo_sep16_scaffold_1490_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8504..8740)
DNA (237bp) protein (79aa)
Uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Nocardia brasiliensis genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Hypothetical Protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_1490_9
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8822..11062)
DNA (2241bp) protein (747aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01R00_SOLUE
hypothetical protein
Tax=RBG_16_Planctomycetes_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_1490_10
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

11139..13577
DNA (2439bp) protein (813aa)
Uncharacterized protein Tax=Bacteroides sp. CAG:709 RepID=R6E873_9BACE
crystallin
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_65_b1_redo_sep16_scaffold_1490_11
RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13612..13857)
DNA (246bp) protein (82aa)
hypothetical protein bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated
PLM4_65_b1_redo_sep16_scaffold_1490_12
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

14115..16448
DNA (2334bp) protein (778aa)
TPR repeat-containing serine/threonin protein kinase bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonin protein kinase
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_1490_13
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16553..17800
DNA (1248bp) protein (416aa)
Inner membrane protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_71_12_curated
PLM4_65_b1_redo_sep16_scaffold_1490_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17952..18311
DNA (360bp) protein (120aa)
ribosome-associated heat shock protein implicated in recycling of 50S subunit bin=CNBR_ACIDO species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_1490_15
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria

Not on your lists

18636..19892
DNA (1257bp) protein (419aa)
NagC family transcriptional regulator Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N2P0_ANATU
NagC family transcriptional regulator
Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
PLM4_65_b1_redo_sep16_scaffold_1490_16
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

20007..23273
DNA (3267bp) protein (1089aa)
TonB-dependent receptor, plug Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01TE1_SOLUE
TonB-dependent receptor, plug
TonB-dependent receptor, plug {ECO:0000313|EMBL:ABJ87079.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_1490_17
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

23366..25723
DNA (2358bp) protein (786aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036DC34B
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:AFL89143.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
Displaying 17 items

View Taxonomy