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PLM4_65_b1_redo_sep16_scaffold_1539

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1539_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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3..653
DNA (651bp) protein (217aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
ABC-type sugar transport system, ATPase component Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNV0_SINAD
sugar ABC transporter ATPase
PLM4_65_b1_redo_sep16_scaffold_1539_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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650..1609
DNA (960bp) protein (320aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQB2_SINAD
ribose/xylose/arabinose/galactoside ABC transporter permease
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:AGA31050.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_65_b1_redo_sep16_scaffold_1539_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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1602..2543
DNA (942bp) protein (314aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRP0_SINAD
ribose/xylose/arabinose/galactoside ABC transporter permease
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:AGA31051.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_65_b1_redo_sep16_scaffold_1539_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2540..3319
DNA (780bp) protein (260aa)
Inner-membrane translocator Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NP6_SOLUE
Periplasmic binding protein domain protein
Periplasmic binding protein domain protein {ECO:0000313|EMBL:AHG92710.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_1539_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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3268..3405
DNA (138bp) protein (46aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRP0_SINAD
ribose/xylose/arabinose/galactoside ABC transporter permease
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:AGA31051.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_65_b1_redo_sep16_scaffold_1539_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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3508..6240
DNA (2733bp) protein (911aa)
Serine/threonine protein kinase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVZ4_HALO1
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1539_7
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6414..12323
DNA (5910bp) protein (1970aa)
hypothetical protein
Putative uncharacterized protein bin=GWA2__Bacteriovorax-rel_49_15 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM4_65_b1_redo_sep16_scaffold_1539_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(12382..14442)
DNA (2061bp) protein (687aa)
Zinc finger/thioredoxin putative Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IN21_ANADE
zinc finger/thioredoxin
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1539_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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14541..15299
DNA (759bp) protein (253aa)
Short-chain dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain alcohol dehydrogenase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_1539_10
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15296..16603)
DNA (1308bp) protein (436aa)
RNA polymerase subunit sigma-24 Tax=Sorangium cellulosum So0157-2 RepID=S4XHY5_SORCE
RNA polymerase subunit sigma-24
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AGP32752.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM4_65_b1_redo_sep16_scaffold_1539_11
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16637..17422)
DNA (786bp) protein (262aa)
Hydrolase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AWP2_STRRD
Short chain dehydrogenase {ECO:0000313|EMBL:GAO02041.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
hydrolase
PLM4_65_b1_redo_sep16_scaffold_1539_12
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

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comp(17419..17835)
DNA (417bp) protein (139aa)
dehydrogenase Tax=Burkholderia oklahomensis RepID=UPI00016A9481
YCII-related domain protein
Tax=RBG_13_Actinobacteria_63_9_curated
PLM4_65_b1_redo_sep16_scaffold_1539_13
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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18006..18809
DNA (804bp) protein (268aa)
Uncharacterized protein Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NQZ3_MARHT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB12571.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
PLM4_65_b1_redo_sep16_scaffold_1539_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(18842..19873)
DNA (1032bp) protein (344aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036D4079
radical SAM protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1539_15
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19965..20906
DNA (942bp) protein (314aa)
Pirin Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W5V6_9ACTO
pirin
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_65_b1_redo_sep16_scaffold_1539_16
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20849..21484)
DNA (636bp) protein (212aa)
Transcriptional regulator, ArsR family Tax=Caulobacter sp. (strain K31) RepID=B0SVL2_CAUSK
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABZ70051.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
PLM4_65_b1_redo_sep16_scaffold_1539_17
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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21614..22426
DNA (813bp) protein (271aa)
DoxX Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR67_OPITP
DoxX protein
DoxX {ECO:0000313|EMBL:ACB74557.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM4_65_b1_redo_sep16_scaffold_1539_18
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(22417..22842)
DNA (426bp) protein (142aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036DE5E3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84332.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_1539_19
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23103..23453
DNA (351bp) protein (117aa)
Transcriptional regulator, ArsR family Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11G92_MESSB
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABG63583.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
PLM4_65_b1_redo_sep16_scaffold_1539_20
RBG_13_Chloroflexi_60_13_curated, Chloroflexi, Bacteria

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23437..23949
DNA (513bp) protein (171aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035FACDF
activator of HSP90 ATPase 1 family protein
Tax=RBG_13_Chloroflexi_60_13_curated
PLM4_65_b1_redo_sep16_scaffold_1539_21
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

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23961..24323
DNA (363bp) protein (121aa)
PF08818 domain protein Tax=Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523 RepID=R8ZTU4_9LEPT
hypothetical protein
Tax=RBG_13_Spirochaetes_68_11_curated
PLM4_65_b1_redo_sep16_scaffold_1539_22
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24324..25217)
DNA (894bp) protein (298aa)
Putative UDP-glucose 4-epimerase {ECO:0000313|EMBL:CCD90439.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CCD90439.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
UDP-glucose 4-epimerase (EC:5.1.3.2)
Putative UDP-glucose 4-epimerase Tax=Bradyrhizobium sp. ORS 375 RepID=H0S8B2_9BRAD
PLM4_65_b1_redo_sep16_scaffold_1539_23
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25378..25959
DNA (582bp) protein (194aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000382BC19
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC82440.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM4_65_b1_redo_sep16_scaffold_1539_24
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25966..26670)
DNA (705bp) protein (235aa)
Putative uncharacterized protein Tax=Thiorhodococcus drewsii AZ1 RepID=G2E5N3_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
PLM4_65_b1_redo_sep16_scaffold_1539_25
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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27051..27749
DNA (699bp) protein (233aa)
Glr1823 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NJK9_GLOVI
Pirin {ECO:0000313|EMBL:AKF05502.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1539_26
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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27757..28344
DNA (588bp) protein (196aa)
Extradiol ring-cleavage dioxygenase class III protein subunit B Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=B5GQ08_STRC2
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
Displaying 26 items

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