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PLM4_65_b1_redo_sep16_scaffold_1702

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1702_1
unknown

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1..285
DNA (285bp) protein (95aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1702_2
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(323..4213)
DNA (3891bp) protein (1297aa)
Alpha-L-rhamnosidase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZ16_OPITP
Alpha-L-rhamnosidase {ECO:0000313|EMBL:ACB76343.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
alpha-L-rhamnosidase
PLM4_65_b1_redo_sep16_scaffold_1702_3
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(4281..5000)
DNA (720bp) protein (240aa)
TetR family transcriptional regulator Tax=Streptomyces sp. AA0539 RepID=UPI0003021046
putative TetR-family transcriptional regulator
Putative TetR-family transcriptional regulator {ECO:0000313|EMBL:BAL91196.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM4_65_b1_redo_sep16_scaffold_1702_4
bacterium UASB14, Bacteria

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5026..7335
DNA (2310bp) protein (770aa)
Beta-glucosidase Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8P126_GRAMM
Glycosyl hydrolase family, 3 {ECO:0000313|EMBL:GAK53983.1}; species="Bacteria.;" source="bacterium UASB14.;"
Beta-glucosidase
PLM4_65_b1_redo_sep16_scaffold_1702_5
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7356..9881
DNA (2526bp) protein (842aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
Carboxylesterase (EC:3.1.1.1)
Carboxylesterase type B Tax=Caulobacter sp. AP07 RepID=J3AN06_9CAUL
PLM4_65_b1_redo_sep16_scaffold_1702_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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10051..10785
DNA (735bp) protein (245aa)
Pyridoxine 5'-phosphate synthase Tax=Anaeromyxobacter RepID=B4UEM3_ANASK
pyridoxine 5'-phosphate synthase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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10823..11584
DNA (762bp) protein (254aa)
protein phosphatase 2C-like protein; K01090 protein phosphatase [EC:3.1.3.16] bin=CNBR_ACIDO species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein phosphatase 2C-like protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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11611..11931
DNA (321bp) protein (107aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

11962..12690
DNA (729bp) protein (243aa)
oxidoreductase, short chain dehydrogenase/reductase family bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
short-chain dehydrogenase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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12767..13282
DNA (516bp) protein (172aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

13288..14220
DNA (933bp) protein (311aa)
Dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7U3_SPHTD
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(14246..15181)
DNA (936bp) protein (312aa)
Sphingosine/diacylglycerol kinase-like enzyme Tax=Opitutaceae bacterium TAV1 RepID=I6APG5_9BACT
diacylglycerol kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(15178..16257)
DNA (1080bp) protein (360aa)
Glycosyl transferase group 1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XSL6_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycosyl transferase family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(16254..17018)
DNA (765bp) protein (255aa)
cell wall biosynthesis glycosyltransferase bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycosyl transferase family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_15
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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17220..17822
DNA (603bp) protein (201aa)
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase bin=GWC2_Nitrospirae-rel_56_14 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=S_Thermoanaerobacterales_50_218
PLM4_65_b1_redo_sep16_scaffold_1702_16
RBG_13_Aminicenantes_64_14_curated, Aminicenantes, Bacteria

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17836..18597
DNA (762bp) protein (254aa)
tRNA pseudouridine synthase A Tax=uncultured Acidobacteria bacterium RepID=H5SFD1_9BACT
tRNA pseudouridine synthase A
Tax=RBG_13_Aminicenantes_64_14_curated
PLM4_65_b1_redo_sep16_scaffold_1702_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

18614..19396
DNA (783bp) protein (261aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP pyrophosphate synthase (EC:2.5.1.31)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1702_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

19362..20240
DNA (879bp) protein (293aa)
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHE1_CHLTF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1702_19
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

20301..21473
DNA (1173bp) protein (391aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIW9_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1702_20
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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21499..22821
DNA (1323bp) protein (441aa)
rseP; RIP metalloprotease RseP (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
putative zinc metalloprotease
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1702_21
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(22963..23334)
DNA (372bp) protein (124aa)
Tax=RBG_16_Deltaproteobacteria_71_12_curated
PLM4_65_b1_redo_sep16_scaffold_1702_22
unknown

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comp(23526..24191)
DNA (666bp) protein (222aa)

This feature has no annotations

Displaying 22 items

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