ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_2239

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2239_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..602)
DNA (600bp) protein (200aa)
Peptidase C26 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EHG6_9FIRM
Predicted glutamine amidotransferases
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2239_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(599..2557)
DNA (1959bp) protein (653aa)
Arginyl-tRNA synthetase {ECO:0000313|EMBL:CDM65299.1}; EC=6.1.1.19 {ECO:0000313|EMBL:CDM65299.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
arginyl-tRNA synthetase
PLM4_65_b1_redo_sep16_scaffold_2239_3
unknown

Not on your lists

2676..3107
DNA (432bp) protein (144aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2239_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3122..5152
DNA (2031bp) protein (677aa)
TonB dependent receptor Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UPW5_MYXSD
Outer membrane receptor protein {ECO:0000313|EMBL:CDM66992.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
TonB dependent receptor
PLM4_65_b1_redo_sep16_scaffold_2239_5
R_OD1_Kaiserbacteria_53_17, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5235..5744)
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=Niabella soli DSM 19437 RepID=H1NMH4_9SPHI
thioesterase
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_53_17_curated
PLM4_65_b1_redo_sep16_scaffold_2239_6
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(5741..6400)
DNA (660bp) protein (220aa)
CDP-alcohol phosphatidyltransferase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RT8_SOLUE
CDP-alcohol phosphatidyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM4_65_b1_redo_sep16_scaffold_2239_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

6478..7497
DNA (1020bp) protein (340aa)
epimerase Tax=Gemmata obscuriglobus RepID=UPI00016C365D
putative L-threonine dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_2239_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7573..10092
DNA (2520bp) protein (840aa)
Macrolide transporter ATP-binding /permease protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QSA7_9CYAN
permease
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_2239_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(10295..11302)
DNA (1008bp) protein (336aa)
Cytochrome c, class I Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPC7_KORVE
cytochrome c, class I
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_2239_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11349..12107)
DNA (759bp) protein (253aa)
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:CDM66674.1}; EC=1.1.1.125 {ECO:0000313|EMBL:CDM66674.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XXP0_SORCE
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2239_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12104..12931)
DNA (828bp) protein (276aa)
Uncharacterized enzyme involved in inositol metabolism Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NA5_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_2239_12
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(12969..14129)
DNA (1161bp) protein (387aa)
Uncharacterized protein Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G5U6_ECHVK
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2239_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14153..17353)
DNA (3201bp) protein (1067aa)
xylan 1,4-beta-xylosidase (EC:3.2.1.37)
Xylan 1,4-beta-xylosidase Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WNZ2_PSEUU
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_2239_14
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(17350..19173)
DNA (1824bp) protein (608aa)
pectinesterase (EC:3.1.1.11)
Pectinesterase {ECO:0000313|EMBL:ACB77546.1}; EC=3.1.1.11 {ECO:0000313|EMBL:ACB77546.1};; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Pectinesterase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZP19_OPITP
PLM4_65_b1_redo_sep16_scaffold_2239_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(19313..21229)
DNA (1917bp) protein (639aa)
Cna B domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027S3_SOLUE
CnaB domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying 15 items

View Taxonomy