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PLM4_65_b1_redo_sep16_scaffold_2657

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2657_1
Marinobacter santoriniensis, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..954)
DNA (954bp) protein (318aa)
Putative membrane protein Tax=Marinobacter santoriniensis NKSG1 RepID=M7CUV7_9ALTE
Putative membrane protein {ECO:0000313|EMBL:EMP57356.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter santoriniensis NKSG1.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2657_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(951..1691)
DNA (741bp) protein (247aa)
Virulence factor {ECO:0000313|EMBL:GAN45393.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
PLM4_65_b1_redo_sep16_scaffold_2657_3
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1706..2734)
DNA (1029bp) protein (343aa)
Regulator {ECO:0000313|EMBL:CRE03900.1}; EC=3.1.3.3 {ECO:0000313|EMBL:CRE03900.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
Putative regulator Tax=Bordetella bronchiseptica RepID=K0MPQ4_BORBM
regulator
PLM4_65_b1_redo_sep16_scaffold_2657_4
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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comp(2710..3468)
DNA (759bp) protein (253aa)
hydrolase
Uncharacterized protein bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Tax=RBG_13_Chloroflexi_56_8b_curated
PLM4_65_b1_redo_sep16_scaffold_2657_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3547..4911)
DNA (1365bp) protein (455aa)
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKC8_CHLTF
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM66685.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
PLM4_65_b1_redo_sep16_scaffold_2657_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(4911..6410)
DNA (1500bp) protein (500aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative Sensor protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Signal transduction histidine kinase
PLM4_65_b1_redo_sep16_scaffold_2657_7
unknown

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6581..6901
DNA (321bp) protein (107aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2657_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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comp(6898..9075)
DNA (2178bp) protein (726aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021P5_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_2657_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(9152..9535)
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=environmental samples RepID=C7FPC8_9BACT
ApaG domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2657_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(9532..10095)
DNA (564bp) protein (188aa)
Methylamine utilization MauE Tax=Desulfococcus multivorans DSM 2059 RepID=S7T9H1_DESML
DoxX family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2657_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(10092..10565)
DNA (474bp) protein (158aa)
Rhodanese homology domain superfamily protein Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A1J6_PELCD
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2657_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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10647..11402
DNA (756bp) protein (252aa)
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA repair protein RecO
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2657_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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11399..12286
DNA (888bp) protein (296aa)
Glycyl-tRNA synthetase, alpha chain Tax=mine drainage metagenome RepID=E6QJY3_9ZZZZ
glycyl-tRNA synthetase alpha subunit
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2657_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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12279..14459
DNA (2181bp) protein (727aa)
glycyl-tRNA synthetase subunit beta (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14] bin=CNBR_ACIDO species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2657_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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14456..17293
DNA (2838bp) protein (946aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
Strongly similar to phosphoenolpyruvate synthase/ pyruvate phosphate dikinase Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q177_9BACT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2657_16
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17322..17714
DNA (393bp) protein (131aa)
Putative uncharacterized protein Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB60_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44922.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
PLM4_65_b1_redo_sep16_scaffold_2657_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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17778..19460
DNA (1683bp) protein (561aa)
DNA mismatch repair protein MutL Tax=Anaeromyxobacter sp. (strain K) RepID=MUTL_ANASK
mutL; DNA mismatch repair protein
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 17 items

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