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PLM4_65_b1_redo_sep16_scaffold_7880

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7880_1
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(3..920)
DNA (918bp) protein (306aa)
beta-propeller repeat-containing to-pal system protein TolB; K03641 TolB protein bin=CNBR_ACIDO species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
biopolymer transport TolB-like protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_7880_2
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(958..1740)
DNA (783bp) protein (261aa)
TonB family protein Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NG54_DESAR
TonB family protein
TonB family protein {ECO:0000313|EMBL:AEB08467.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
PLM4_65_b1_redo_sep16_scaffold_7880_3
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1737..2123)
DNA (387bp) protein (129aa)
hypothetical protein Tax=Aminicenantes RepID=UPI0003770C15
protein TolR
Protein TolR {ECO:0000313|EMBL:ADW12057.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_b1_redo_sep16_scaffold_7880_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(2244..2963)
DNA (720bp) protein (240aa)
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
MotA/TolQ/ExbB proton channel
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_7880_5
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

3132..4814
DNA (1683bp) protein (561aa)
DNA repair protein RecN Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IU49_KORVE
DNA repair protein RecN
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_7880_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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4825..6150
DNA (1326bp) protein (442aa)
(dimethylallyl)adenosine tRNA methylthiotransferase
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA bin=CNBR_ACIDO species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_7880_7
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

6210..6683
DNA (474bp) protein (158aa)
Putative uncharacterized protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F0W5_ACIC5
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_7880_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6782..7537
DNA (756bp) protein (252aa)
Uncharacterized protein Tax=uncultured bacterium F39-01 RepID=I3VIC3_9BACT
ATPase involved in chromosome partitioning {ECO:0000313|EMBL:CDM64807.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
chromosome partitioning ATPase
PLM4_65_b1_redo_sep16_scaffold_7880_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7530..8369
DNA (840bp) protein (280aa)
ParB-like partition protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ParB-like partition protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_7880_10
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8420..9214
DNA (795bp) protein (265aa)
Putative oxidoreductase Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4NHW0_KITSK
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAJ31090.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
PLM4_65_b1_redo_sep16_scaffold_7880_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9319..10602
DNA (1284bp) protein (428aa)
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pseudoalteromonas citrea genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_7880_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10590..11261
DNA (672bp) protein (224aa)
alias=16ft_combo_ws3_scaffold_144_47 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_7880_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11334..12158
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA66_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_7880_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12155..13165
DNA (1011bp) protein (337aa)
Uncharacterized protein Tax=Pseudomonas sp. HPB0071 RepID=N2IXB5_9PSED bin=16ft_combo_ws3_JS1 species=Pseudomonas sp. HPB0071 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_7880_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

13162..13899
DNA (738bp) protein (246aa)
CDP-alcohol phosphatidyltransferase Tax=Anaeromyxobacter RepID=B4UJH8_ANASK bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
CDP-alcohol phosphatidyltransferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_7880_16
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14068..16017
DNA (1950bp) protein (650aa)
acsA; acetate--CoA ligase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U798_9DELT
Tax=CG_Delta_07
PLM4_65_b1_redo_sep16_scaffold_7880_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16022..16468)
DNA (447bp) protein (149aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_7880_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

16617..17153
DNA (537bp) protein (179aa)
hypothetical protein bin=bin7_NC10_sister species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_7880_19
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

17153..18181
DNA (1029bp) protein (343aa)
Pseudouridine synthase bin=GWA1_Deltaproteobacteria_52_35 species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
RluA family pseudouridine synthase
Tax=GWA1_Bdellovibrionales_52_35_curated
Displaying 19 items

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