ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_7890

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7890_1
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..553
DNA (552bp) protein (184aa)
Glr1418 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NKQ9_GLOVI
Permease {ECO:0000313|EMBL:AKF81687.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_7890_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

614..1072
DNA (459bp) protein (153aa)
ribose 5-phosphate isomerase (EC:5.3.1.6)
Sugar-phosphate isomerase, RpiB/LacA/LacB family bin=GWA2_Methylomirabilis_73_35 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_7890_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

1078..2352
DNA (1275bp) protein (425aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] bin=CNBR_ACIDO species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_7890_4
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2386..4593
DNA (2208bp) protein (736aa)
peptidyl-dipeptidase Dcp (EC:3.4.15.5)
Peptidyl-dipeptidase Dcp Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPM8_OPITP
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
PLM4_65_b1_redo_sep16_scaffold_7890_5
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

4695..6011
DNA (1317bp) protein (439aa)
serine/threonin protein kinase bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonine protein kinase
Tax=RBG_16_Aminicenantes_63_16_curated
PLM4_65_b1_redo_sep16_scaffold_7890_6
R_WOR_2_67_20, WOR-2, Bacteria

Not on your lists

comp(6024..7775)
DNA (1752bp) protein (584aa)
radical SAM protein Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B5A993
radical SAM domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_67_20_curated
PLM4_65_b1_redo_sep16_scaffold_7890_7
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7912..9330)
DNA (1419bp) protein (473aa)
Pyridoxal-dependent decarboxylase Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1Q1_RHOVT
pyridoxal-dependent decarboxylase
Amino acid decarboxylase {ECO:0000313|EMBL:KAI94205.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
PLM4_65_b1_redo_sep16_scaffold_7890_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(9457..10674)
DNA (1218bp) protein (406aa)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM4_65_b1_redo_sep16_scaffold_7890_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

10818..11105
DNA (288bp) protein (96aa)
Helicase c2 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RSA8_ALLVD
helicase c2
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying 9 items

View Taxonomy