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PLM2_5_b1_sep16_scaffold_2572

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_2572_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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98..877
DNA (780bp) protein (260aa)
HEAT domain protein repeat-containing protein Tax=Microcystis aeruginosa (strain NIES-843) RepID=B0JQF2_MICAN
PBS lyase HEAT-like repeat protein {ECO:0000313|EMBL:CDM65975.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
HEAT repeat-containing protein
PLM2_5_b1_sep16_scaffold_2572_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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918..2096
DNA (1179bp) protein (393aa)
Putative uncharacterized protein Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W620_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92500.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
PLM2_5_b1_sep16_scaffold_2572_3
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2118..3089
DNA (972bp) protein (324aa)
hypothetical protein Tax=Lewinella cohaerens RepID=UPI000370B936
Methyltransferase {ECO:0000313|EMBL:KGE87377.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
hypothetical protein
PLM2_5_b1_sep16_scaffold_2572_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

3089..3835
DNA (747bp) protein (249aa)
BirA, biotin-(Acetyl-CoA-carboxylase) ligase {ECO:0000313|EMBL:CDM66223.1}; EC=6.3.4.15 {ECO:0000313|EMBL:CDM66223.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15)
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase Tax=uncultured Acidobacteria bacterium RepID=H5SPQ5_9BACT
PLM2_5_b1_sep16_scaffold_2572_5
unknown

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3885..4214
DNA (330bp) protein (110aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_2572_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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4214..4957
DNA (744bp) protein (248aa)
pantothenate kinase (EC:2.7.1.33)
pantothenate kinase Tax=Synergistetes bacterium JGI 0000079-D21 RepID=UPI0003B31C08
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM2_5_b1_sep16_scaffold_2572_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(4945..6519)
DNA (1575bp) protein (525aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:CDM64699.1}; EC=3.5.1.4 {ECO:0000313|EMBL:CDM64699.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Amidase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UCB1_MYXSD
Amidase
PLM2_5_b1_sep16_scaffold_2572_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6619..7557
DNA (939bp) protein (313aa)
DEAD/DEAH box helicase domain protein Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZWY2_DESOH
Superfamily II RNA helicase {ECO:0000313|EMBL:CDM64670.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DEAD/DEAH box helicase domain-containing protein
PLM2_5_b1_sep16_scaffold_2572_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7545..7925
DNA (381bp) protein (127aa)
RNA helicase of the superfamily II Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0Q9A5_DESAH
Superfamily II RNA helicase {ECO:0000313|EMBL:CDM64670.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
RNA helicase of the superfamily II
PLM2_5_b1_sep16_scaffold_2572_10

Not on your lists

comp(7928..8809)
DNA (882bp) protein (294aa)
mshD; Mycothiol acetyltransferase (EC:2.3.1.189)
hypothetical protein Tax=Pontibacter roseus RepID=UPI00037AE5F3
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:AIA18046.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM2_5_b1_sep16_scaffold_2572_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8866..9732
DNA (867bp) protein (289aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (EC:1.17.1.2)
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F9R1_DESDL
PLM2_5_b1_sep16_scaffold_2572_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9742..10542)
DNA (801bp) protein (267aa)
Succinate dehydrogenase subunit B {ECO:0000313|EMBL:CDM65067.1}; EC=1.3.99.1 {ECO:0000313|EMBL:CDM65067.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
sdhB; succinate dehydrogenase iron-sulfur subunit (EC:1.3.99.1)
Succinate dehydrogenase subunit B Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J5N9_DESRM
PLM2_5_b1_sep16_scaffold_2572_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10545..12332)
DNA (1788bp) protein (596aa)
Succinate dehydrogenase subunit A {ECO:0000313|EMBL:CDM65068.1}; EC=1.3.5.1 {ECO:0000313|EMBL:CDM65068.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein (EC:1.3.99.1)
Succinate dehydrogenase subunit A Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE92_CHLTF
PLM2_5_b1_sep16_scaffold_2572_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12340..13059)
DNA (720bp) protein (240aa)
Succinate dehydrogenase subunit C {ECO:0000313|EMBL:CDM65069.1}; EC=1.3.5.1 {ECO:0000313|EMBL:CDM65069.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family (EC:1.3.99.1)
Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE93_CHLTF
PLM2_5_b1_sep16_scaffold_2572_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13217..14101
DNA (885bp) protein (295aa)
Transcriptional regulator, LysR family Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EMN2_CORAD
Transcriptional regulator {ECO:0000313|EMBL:CDM65070.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
LysR family transcriptional regulator
PLM2_5_b1_sep16_scaffold_2572_16
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

14109..14999
DNA (891bp) protein (297aa)
ornithine cyclodeaminase (EC:4.3.1.12)
Ornithine cyclodeaminase {ECO:0000313|EMBL:ACZ43638.1}; EC=4.3.1.12 {ECO:0000313|EMBL:ACZ43638.1};; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Ornithine cyclodeaminase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIR8_THET1
PLM2_5_b1_sep16_scaffold_2572_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(15000..16286)
DNA (1287bp) protein (429aa)
Uncharacterized domain HDIG-containing protein {ECO:0000313|EMBL:CDM65287.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Metal dependent phosphohydrolase bin=GWC2_Deltaproteobacteria_55_46 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
metal dependent phosphohydrolase with GAF sensor
PLM2_5_b1_sep16_scaffold_2572_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(16306..16626)
DNA (321bp) protein (107aa)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:CDM65286.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Anti-anti-sigma factor bin=GWB2_Proteobacteria_55_19 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
anti-anti-sigma factor
PLM2_5_b1_sep16_scaffold_2572_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(16752..17621)
DNA (870bp) protein (290aa)
3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase {ECO:0000313|EMBL:CDM66857.1}; EC=3.1.3.7 {ECO:0000313|EMBL:CDM66857.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative phosphatase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I576_CALAS
putative phosphatase
PLM2_5_b1_sep16_scaffold_2572_20

Not on your lists

comp(17989..19185)
DNA (1197bp) protein (399aa)
DegP2 peptidase (EC:3.4.21.-)
DegP2 peptidase, Serine peptidase, MEROPS family S01B Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ18_CHLTF
Trypsin-like peptidase domain protein {ECO:0000313|EMBL:AIA16101.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM2_5_b1_sep16_scaffold_2572_21

Not on your lists

comp(19353..19754)
DNA (402bp) protein (134aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA16102.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 21 items

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