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AR_MS4_05142019_scaffold_1129

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_1129_1
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(879..4145)
DNA (3267bp) protein (1089aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037FB242
Tax=RBG_13_Planctomycetes_50_24_curated
AR_MS4_05142019_scaffold_1129_2
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(4321..6102)
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B6C8CA
Endopolygalacturonase
Endopolygalacturonase {ECO:0000313|EMBL:CCW36197.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
AR_MS4_05142019_scaffold_1129_3
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(6311..7210)
DNA (900bp) protein (300aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TX58_DESML
Iron ABC transporter {ECO:0000313|EMBL:KGM38420.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
ABC-3 protein
AR_MS4_05142019_scaffold_1129_4
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7207..8763)
DNA (1557bp) protein (519aa)
ABC transporter n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5S1H8_9PLAN
ABC transporter {ECO:0000313|EMBL:EMI20034.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
mntB; manganese ABC transporter permease
AR_MS4_05142019_scaffold_1129_5
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8760..9575)
DNA (816bp) protein (272aa)
Zinc/manganese/iron ABC transporter, ATP-binding protein n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RL45_9PLAN
Zinc/manganese/iron ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EMI20035.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
mntA; manganese transport system ATP-binding protein
AR_MS4_05142019_scaffold_1129_6
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(9572..10576)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000380F38F
periplasmic solute binding protein
Periplasmic solute binding protein {ECO:0000313|EMBL:ADE55762.1}; Flags: Precursor;; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
AR_MS4_05142019_scaffold_1129_7
unknown

Not on your lists

10640..11122
DNA (483bp) protein (161aa)
Iron (Metal) dependent repressor, DtxR family n=2 Tax=unclassified Opitutaceae RepID=H1J042_9BACT
DNA-binding transcriptional regulator of mntH {ECO:0000313|EMBL:CPR15487.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Mn-dependent transcriptional regulator
AR_MS4_05142019_scaffold_1129_8
unknown

Not on your lists

comp(11186..11737)
DNA (552bp) protein (184aa)

This feature has no annotations

AR_MS4_05142019_scaffold_1129_9
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(11775..12332)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZN01_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB76453.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1129_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12489..13367)
DNA (879bp) protein (293aa)
Transcriptional regulator, LysR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJR3_9BACT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEF59939.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LysR family transcriptional regulator
AR_MS4_05142019_scaffold_1129_11
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13501..15135)
DNA (1635bp) protein (545aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FEI2_DESAA
PAS/PAC sensor hybrid histidine kinase
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ACL03386.1}; Flags: Precursor;; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
AR_MS4_05142019_scaffold_1129_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15546..16094
DNA (549bp) protein (183aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR79_9BACT
Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:EEF57692.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
TraR/DksA family transcriptional regulator
AR_MS4_05142019_scaffold_1129_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


16097..16264
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR78_9BACT
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
50S ribosomal protein L33
AR_MS4_05142019_scaffold_1129_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


16277..16543
DNA (267bp) protein (89aa)
Ribosomal protein S18 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR77_9BACT
Ribosomal protein S18 {ECO:0000313|EMBL:EEF57690.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rpsR; ribosomal protein S18
AR_MS4_05142019_scaffold_1129_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16697..17536
DNA (840bp) protein (280aa)
Periplasmic solute binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR76_9BACT
Periplasmic solute binding protein {ECO:0000313|EMBL:EEF57689.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
periplasmic solute binding protein
AR_MS4_05142019_scaffold_1129_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17533..18312
DNA (780bp) protein (260aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR75_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF57688.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
znuC; high-affinity zinc uptake system ATP-binding protein ZnuC
AR_MS4_05142019_scaffold_1129_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18296..19102
DNA (807bp) protein (269aa)
ABC-3 protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR74_9BACT
ABC-3 protein {ECO:0000313|EMBL:EEF57687.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC-3 protein
AR_MS4_05142019_scaffold_1129_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

19186..19563
DNA (378bp) protein (126aa)
Ferric uptake regulator, Fur family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XR73_9BACT
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:EEF57686.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ferric uptake regulator-like protein
AR_MS4_05142019_scaffold_1129_19

Not on your lists

19745..20239
DNA (495bp) protein (165aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUQ2_OPITP
Uncharacterized protein {ECO:0000313|EMBL:KKK84931.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ECF subfamily RNA polymerase sigma-24 factor
AR_MS4_05142019_scaffold_1129_20
unknown

Not on your lists

20271..20555
DNA (285bp) protein (95aa)

This feature has no annotations

AR_MS4_05142019_scaffold_1129_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

20575..24171
DNA (3597bp) protein (1199aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMT3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58858.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
AR_MS4_05142019_scaffold_1129_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24491..26176
DNA (1686bp) protein (562aa)
Outer membrane protein-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCY5_9BACT
Outer membrane protein-like protein {ECO:0000313|EMBL:EEF62331.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
outer membrane protein
AR_MS4_05142019_scaffold_1129_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

26160..28001
DNA (1842bp) protein (614aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCY6_9BACT
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEF62332.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
RND family efflux transporter, MFP subunit
AR_MS4_05142019_scaffold_1129_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

28020..28730
DNA (711bp) protein (237aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCY7_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF62333.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
AR_MS4_05142019_scaffold_1129_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

28741..30063
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCY8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62334.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
antimicrobial peptide ABC transporter permease
AR_MS4_05142019_scaffold_1129_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(30086..31015)
DNA (930bp) protein (310aa)
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:KCZ71475.1}; EC=1.6.99.3 {ECO:0000313|EMBL:KCZ71475.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI00037C648B
epimerase
AR_MS4_05142019_scaffold_1129_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(31064..31537)
DNA (474bp) protein (158aa)
Transcriptional regulator n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGN9_9BACT
Transcriptional regulator {ECO:0000313|EMBL:EEF61090.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ArsR family transcriptional regulator
AR_MS4_05142019_scaffold_1129_28
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

31871..32374
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI000237706F
Uncharacterized protein {ECO:0000313|EMBL:KFF18473.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hypothetical protein
AR_MS4_05142019_scaffold_1129_29
unknown

Not on your lists

32925..33509
DNA (585bp) protein (195aa)

This feature has no annotations

AR_MS4_05142019_scaffold_1129_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

33624..37448
DNA (3825bp) protein (1275aa)
Immunoglobulin I-set domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNV4_9BACT
Immunoglobulin I-set domain protein {ECO:0000313|EMBL:EEF58527.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
outer membrane adhesin-like protein
Displaying items 1-30 of 38 in total

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