ggKbase home page

AR_MS4_05142019_scaffold_1817

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_1817_trna_1
unknown

Not on your lists

221..304
DNA (84bp)
transferRNA Leu
AR_MS4_05142019_scaffold_1817_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

585..1436
DNA (852bp) protein (284aa)
Chromosome segregation and condensation protein ScpA n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG7_9BACT
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
scpA; segregation and condensation protein A
AR_MS4_05142019_scaffold_1817_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1761..2219
DNA (459bp) protein (153aa)
Chromosome segregation and condensation protein, ScpB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG8_9BACT
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
chromosome segregation and condensation protein ScpB
AR_MS4_05142019_scaffold_1817_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

2241..3302
DNA (1062bp) protein (354aa)
pheA; p-protein, bifunctional chorismate mutase/prephenate dehydratase (EC:4.2.1.51 5.4.99.5)
Chorismate mutase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG9_9BACT
Chorismate mutase {ECO:0000313|EMBL:EEF57540.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
AR_MS4_05142019_scaffold_1817_4
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3362..6577)
DNA (3216bp) protein (1072aa)
Sensor protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FXP4_STIAD
Uncharacterized protein {ECO:0000313|EMBL:KFE66209.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
sensor protein
AR_MS4_05142019_scaffold_1817_5
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(6761..8872)
DNA (2112bp) protein (704aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR28_OPITP
flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:ACB73695.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1817_6
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(8968..10098)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI0003700548
type III secretion exporter
Type III secretion exporter {ECO:0000313|EMBL:ACB73696.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1817_7
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(10133..10891)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000371C475
type III secretion system inner membrane R protein
Type III secretion system inner membrane R protein {ECO:0000313|EMBL:ACB73697.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1817_8
Spirochaeta sp. JC230, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(10932..11201)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00037371F1
Flagellar biosynthesis protein FliQ {ECO:0000313|EMBL:KGE73537.1}; TaxID=1480694 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC230.;"
fliQ; flagellar biosynthesis protein
AR_MS4_05142019_scaffold_1817_9
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(11207..12016)
DNA (810bp) protein (270aa)
flagellar biosynthetic protein FliP (EC:3.1.1.3)
Flagellar biosynthetic protein FliP {ECO:0000313|EMBL:ACB73699.1}; EC=3.1.1.3 {ECO:0000313|EMBL:ACB73699.1};; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000376D0F3
AR_MS4_05142019_scaffold_1817_10
unknown

Not on your lists

comp(12013..12462)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000364671F
AR_MS4_05142019_scaffold_1817_11
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12459..12719)
DNA (261bp) protein (87aa)
Flagellar motor switch protein FliN n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK47_9BACT
Flagellar motor switch protein FliN {ECO:0000313|EMBL:EDY83829.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
AR_MS4_05142019_scaffold_1817_12
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(12737..13744)
DNA (1008bp) protein (336aa)
Flagellar motor switch protein FliM n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR35_OPITP
flagellar motor switch protein FliM
Flagellar motor switch protein FliM {ECO:0000313|EMBL:ACB73702.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1817_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(13751..14410)
DNA (660bp) protein (220aa)
Flagellar basal body-associated protein FliL n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR36_OPITP
flagellar basal body-associated protein FliL
Flagellar basal body-associated protein FliL {ECO:0000313|EMBL:ACB73703.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1817_14
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14432..15265)
DNA (834bp) protein (278aa)
Flagellar hook protein n=1 Tax=Geobacillus thermodenitrificans (strain NG80-2) RepID=A4IMA2_GEOTN
hypothetical protein
Flagellar hook protein FlgE {ECO:0000313|EMBL:AIY16317.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
AR_MS4_05142019_scaffold_1817_15
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(15280..15717)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00037E02E8
Flagellar basal body rod modification protein FlgD {ECO:0000313|EMBL:EQB29438.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
flagellar hook capping protein
AR_MS4_05142019_scaffold_1817_16
unknown

Not on your lists

comp(15722..16444)
DNA (723bp) protein (241aa)

This feature has no annotations

AR_MS4_05142019_scaffold_1817_17
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(17413..18030)
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK41_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDY82089.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
AR_MS4_05142019_scaffold_1817_18
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18027..18500)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00036E5A7F
Flagellar export protein FliJ
Flagellar export protein FliJ {ECO:0000313|EMBL:CDI40655.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
AR_MS4_05142019_scaffold_1817_19
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18504..19901)
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00036CC580
fliI; flagellar protein export ATPase flii
Tax=CG_Solirubrobact_01
AR_MS4_05142019_scaffold_1817_20
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19898..20497)
DNA (600bp) protein (200aa)
hypothetical protein, partial n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00037D2A3B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF07596.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
AR_MS4_05142019_scaffold_1817_21
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(20472..21527)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI00035ED5E7
Flagellar motor switch protein FliG {ECO:0000313|EMBL:EDY85233.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
flagellar motor switch protein FliG
AR_MS4_05142019_scaffold_1817_22
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(21552..23171)
DNA (1620bp) protein (540aa)
Flagellar M-ring protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IM58_9BACT
flagellar M-ring protein FliF
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
AR_MS4_05142019_scaffold_1817_23
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(23212..23589)
DNA (378bp) protein (126aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR48_OPITP
flagellar hook-basal body complex subunit FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1817_24
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(23606..24031)
DNA (426bp) protein (142aa)
Flagellar basal-body rod protein FlgC n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR49_OPITP
flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_1817_25
GWF2_Verrucomicrobia_51_19_curated, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(24046..24429)
DNA (384bp) protein (128aa)
Flagellar basal body rod protein FlgB id=3088999 bin=GWF2_Verrucomicrobia_51_19 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
flagellar basal-body rod protein FlgB
Tax=GWF2_Verrucomicrobia_51_19_curated
AR_MS4_05142019_scaffold_1817_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

25002..25520
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP84_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58335.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Displaying 27 items

View Taxonomy