ggKbase home page

AR_MS4_05142019_scaffold_4610

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_4610_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(145..2127)
DNA (1983bp) protein (661aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000367A9CA
acetate--CoA ligase
AR_MS4_05142019_scaffold_4610_2
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(2239..2679)
DNA (441bp) protein (147aa)
ribose 5-phosphate isomerase n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037773BA
Ribose 5-phosphate isomerase {ECO:0000313|EMBL:KIE58959.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
rpiB; Ribose 5-phosphate isomerase RpiB
AR_MS4_05142019_scaffold_4610_3
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(2940..3428)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000371F7A9
Modulator of heat shock repressor CtsR, McsA {ECO:0000313|EMBL:CCG91319.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
mcsA; Modulator of heat shock repressor CtsR, McsA
AR_MS4_05142019_scaffold_4610_4
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3425..4351)
DNA (927bp) protein (309aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:ACX51391.1}; EC=2.6.1.42 {ECO:0000313|EMBL:ACX51391.1};; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035D8A75
AR_MS4_05142019_scaffold_4610_5
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(4473..5240)
DNA (768bp) protein (256aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003764626
salX; ABC transporter ATPase
AR_MS4_05142019_scaffold_4610_6
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(5233..6525)
DNA (1293bp) protein (431aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003800F2E
lolE; ABC transporter permease
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:ACD82264.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_4610_7
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(6522..7382)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036983CD
Prephenate dehydrogenase {ECO:0000313|EMBL:KIE58966.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
tyrA; Prephenate dehydrogenase
AR_MS4_05142019_scaffold_4610_8
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(7379..8509)
DNA (1131bp) protein (377aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035FD7D7
hisC; Histidinol-phosphate/aromatic aminotransferase
AR_MS4_05142019_scaffold_4610_9
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(8553..9062)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000371174C
wzb; protein-tyrosine-phosphatase
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:ACD82268.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_4610_10
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

9175..9684
DNA (510bp) protein (170aa)
NADH-quinone oxidoreductase subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
NADH-quinone oxidoreductase subunit B n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036D0733
nuoB; NADH dehydrogenase subunit B
AR_MS4_05142019_scaffold_4610_11
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

9760..10347
DNA (588bp) protein (196aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000371CACC
nuoC; NADH dehydrogenase subunit C
AR_MS4_05142019_scaffold_4610_12
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

10344..11579
DNA (1236bp) protein (412aa)
NADH-quinone oxidoreductase subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
NADH dehydrogenase subunit D n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036BE9DB
nuoD; NADH dehydrogenase subunit D
AR_MS4_05142019_scaffold_4610_13
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

11599..12153
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00038287FD
nuoE; NADH-ubiquinone oxidoreductase chain E
NADH-ubiquinone oxidoreductase chain E {ECO:0000313|EMBL:ACD82272.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_4610_14
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

12155..12844
DNA (690bp) protein (230aa)
NADH dehydrogenase {ECO:0000313|EMBL:KIE58972.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KIE58972.1};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
NADH dehydrogenase n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036A6D77
nuoF; NADH-ubiquinone oxidoreductase chain F
Displaying 14 items

View Taxonomy