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AR_MS4_05142019_scaffold_2184

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_2184_1
unknown

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3..137
DNA (135bp) protein (45aa)

This feature has no annotations

AR_MS4_05142019_scaffold_2184_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(167..1018)
DNA (852bp) protein (284aa)
Beta-lactamase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGP5_9BACT
Beta-lactamase domain protein {ECO:0000313|EMBL:EEF61096.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phnP; Metal-dependent hydrolase of the beta-lactamase superfamily
AR_MS4_05142019_scaffold_2184_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1347..2264)
DNA (918bp) protein (306aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VMU5_POLNA
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM36973.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
AR_MS4_05142019_scaffold_2184_4
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2392..3900
DNA (1509bp) protein (503aa)
Major facilitator superfamily MFS_1 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12EW1_POLSJ
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABE42931.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
AR_MS4_05142019_scaffold_2184_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4236..5504
DNA (1269bp) protein (423aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Adenylosuccinate synthetase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS13_9BACT
purA; adenylosuccinate synthase
AR_MS4_05142019_scaffold_2184_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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5533..6270
DNA (738bp) protein (246aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
UDP diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS12_9BACT
AR_MS4_05142019_scaffold_2184_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

6290..7228
DNA (939bp) protein (313aa)
Phosphatidate cytidylyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS11_9BACT
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:EEF57382.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cdsA; phosphatidate cytidylyltransferase
AR_MS4_05142019_scaffold_2184_8
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(7240..7629)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=unclassified Verrucomicrobia (miscellaneous) RepID=UPI00036853CA
transport protein RbsD/FucU
RbsD or FucU transport {ECO:0000313|EMBL:ACB76482.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
AR_MS4_05142019_scaffold_2184_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7782..8399)
DNA (618bp) protein (206aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Superoxide dismutase (EC:1.15.1.1)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037A0107
AR_MS4_05142019_scaffold_2184_10
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8786..9115)
DNA (330bp) protein (110aa)
UPF0345 protein Oter_1403 n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS12_OPITP
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
AR_MS4_05142019_scaffold_2184_11
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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9346..11172
DNA (1827bp) protein (609aa)
UPF0313 protein Psta_1639 id=3806952 bin=GWF2_Lentisphaerae_49_21 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
radical SAM domain-containing protein
Tax=GWF2_Lentisphaerae_49_21_curated
AR_MS4_05142019_scaffold_2184_12
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(11203..12195)
DNA (993bp) protein (331aa)
tRNA-dihydrouridine synthase id=4393524 bin=GWF2_Lentisphaerae_57_35 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
dihydrouridine synthase DuS
Tax=GWF2_Lentisphaerae_57_35_curated
AR_MS4_05142019_scaffold_2184_13
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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comp(12247..13335)
DNA (1089bp) protein (363aa)
Putative uncharacterized protein id=4395750 bin=GWF2_Clostridiales_38_85 species=Dysgonomonas mossii genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
AR_MS4_05142019_scaffold_2184_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13625..15934
DNA (2310bp) protein (770aa)
Vault protein inter-alpha-trypsin domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ17_9BACT
Vault protein inter-alpha-trypsin domain protein {ECO:0000313|EMBL:EEF58021.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
vault protein, inter-alpha-trypsin domain-containing protein
AR_MS4_05142019_scaffold_2184_15
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16106..18013
DNA (1908bp) protein (636aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SL07_RHOMR
PAS/PAC sensor hybrid histidine kinase
Tax=RBG_13_Deltaproteobacteria_61_14_curated
AR_MS4_05142019_scaffold_2184_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18225..18632
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58971.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
AR_MS4_05142019_scaffold_2184_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18625..19050
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN73_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58735.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
AR_MS4_05142019_scaffold_2184_18
unknown

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comp(19218..19901)
DNA (684bp) protein (228aa)

This feature has no annotations

AR_MS4_05142019_scaffold_2184_19
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19902..20927)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L2UKG6_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EXI81265.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
AR_MS4_05142019_scaffold_2184_20
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(21171..21356)
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ80038.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
Displaying 20 items

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