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AR_MS4_05142019_scaffold_2387

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_2387_1
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(35..1201)
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000380D066
rodA; Rod shape-determining protein rodA
Rod shape-determining protein rodA {ECO:0000313|EMBL:ACD83773.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2387_2
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(1213..3231)
DNA (2019bp) protein (673aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036E258B
ftsI; Cell division protein FtsI
AR_MS4_05142019_scaffold_2387_3
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(3261..3836)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000363B594
Uncharacterized protein {ECO:0000313|EMBL:CCG92008.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
AR_MS4_05142019_scaffold_2387_4
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(4148..4966)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003780826
mreC; Rod shape-determining protein mreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2387_5
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(5093..6223)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037E3FD5
Rod shape-determining protein {ECO:0000313|EMBL:CCG92006.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
mreB; rod shape-determining protein MreB
AR_MS4_05142019_scaffold_2387_6
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

6249..7130
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000360BF86
aroD; 3-dehydroquinate dehydratase
3-dehydroquinate dehydratase {ECO:0000313|EMBL:ACD83767.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2387_7
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(7037..8350)
DNA (1314bp) protein (438aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003804620
ndh; NADH dehydrogenase, FAD-containing subunit
NADH dehydrogenase, FAD-containing subunit {ECO:0000313|EMBL:ACD83662.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2387_8
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(8451..9920)
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035DAB2C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD83766.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2387_9
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(9917..10786)
DNA (870bp) protein (290aa)
Chorismate mutase n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DWV2_METI4
Chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:ACD83765.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2387_10
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(10984..11946)
DNA (963bp) protein (321aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035E7B72
trpS; Tryptophanyl-tRNA synthetase
AR_MS4_05142019_scaffold_2387_11
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(12026..12511)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003717B71
PIN domain containing protein
PIN domain containing protein {ECO:0000313|EMBL:ACD83763.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2387_12
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

12804..14357
DNA (1554bp) protein (518aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036508CE
Serine protease Do {ECO:0000313|EMBL:CCG92000.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
degQ; Serine protease Do
AR_MS4_05142019_scaffold_2387_13
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14393..14899
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000361E65D
Acyl carrier protein {ECO:0000256|RuleBase:RU003545}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
AR_MS4_05142019_scaffold_2387_14
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

14896..15696
DNA (801bp) protein (267aa)
Type III pantothenate kinase {ECO:0000255|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000255|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000255|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000255|HAMAP-Rule:MF_01274}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003640304
Pantothenate kinase type III
AR_MS4_05142019_scaffold_2387_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(15703..16188)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035DDCEF
UPF0234 protein CfE428DRAFT_0350 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
conserved hypothetical protein
AR_MS4_05142019_scaffold_2387_16
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(16251..16916)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037E484A
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:KIE59132.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
LysM domain containing protein
AR_MS4_05142019_scaffold_2387_17
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(16897..19080)
DNA (2184bp) protein (728aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037FF0DB
lig; NAD-dependent DNA ligase
AR_MS4_05142019_scaffold_2387_18
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(19149..20072)
DNA (924bp) protein (308aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037B52AD
dinP; DNA repair nucleotidyltransferase/DNA polymerase
Displaying 18 items

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