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AR_MS4_05142019_scaffold_2713

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_2713_1
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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1..1299
DNA (1299bp) protein (433aa)
membrane protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036AA6E9
Outer membrane receptor protein, mostly Fe transport {ECO:0000313|EMBL:CCG91251.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
cirA; Outer membrane receptor protein, mostly Fe transport
AR_MS4_05142019_scaffold_2713_2
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

1431..4244
DNA (2814bp) protein (938aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003630808
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:ACD82255.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2713_trna_1
unknown

Not on your lists

4374..4447
DNA (74bp)
transferRNA Arg
AR_MS4_05142019_scaffold_2713_3
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(4385..6853)
DNA (2469bp) protein (823aa)
Outer membrane receptor protein, mostly Fe transport n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0K0Y1_9BACT
Outer membrane receptor protein, mostly Fe transport {ECO:0000313|EMBL:CCG93150.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
cirA; Outer membrane receptor protein, mostly Fe transport
AR_MS4_05142019_scaffold_2713_4
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(7000..7677)
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036D2F30
Uncharacterized protein {ECO:0000313|EMBL:CCG92363.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein
AR_MS4_05142019_scaffold_2713_5
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

7771..9216
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003760388
Predicted exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:CCG91385.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
ysh1; exonuclease of the beta-lactamase fold involved in RNA processing
AR_MS4_05142019_scaffold_2713_6
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(9111..10634)
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000372B7D0
arnT; 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family
4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family {ECO:0000313|EMBL:ACD84360.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_2713_7
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(10853..11452)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003731A06
SAM-dependent methyltransferase {ECO:0000313|EMBL:KIE57871.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
smtA; SAM-dependent methyltransferase
AR_MS4_05142019_scaffold_2713_8
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(11430..12161)
DNA (732bp) protein (244aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000370DAE2
purL; phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain
AR_MS4_05142019_scaffold_2713_9
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(12158..12418)
DNA (261bp) protein (87aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003802309
purS; phosphoribosylformylglycinamidine (FGAM) synthase, PurS component
AR_MS4_05142019_scaffold_2713_10
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(12427..13707)
DNA (1281bp) protein (427aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000371E0F1
purB; adenylosuccinate lyase
AR_MS4_05142019_scaffold_2713_11
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13782..14354)
DNA (573bp) protein (191aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036432BE
2'-5' RNA ligase
AR_MS4_05142019_scaffold_2713_12
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

14471..14848
DNA (378bp) protein (126aa)
NADH-quinone oxidoreductase subunit {ECO:0000256|RuleBase:RU003639}; EC=1.6.5.11 {ECO:0000256|RuleBase:RU003639};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036909DC
nuoA; NADH dehydrogenase subunit A
AR_MS4_05142019_scaffold_2713_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14860..15186)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036CF7AC
small multidrug resistance protein
Small multidrug resistance protein {ECO:0000313|EMBL:BAI73206.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
AR_MS4_05142019_scaffold_2713_14
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(15214..15759)
DNA (546bp) protein (182aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036767BA
pyrE; Orotate phosphoribosyltransferase
AR_MS4_05142019_scaffold_2713_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15764..16144)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035D3FDF
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:CBK98790.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
AR_MS4_05142019_scaffold_2713_16
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16241..16882
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000364BA5E
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
chemotaxis protein CheR
AR_MS4_05142019_scaffold_2713_17
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

16909..18024
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037038E3
Metal ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIE58441.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
trpE; Anthranilate/para-aminobenzoate synthase component I
AR_MS4_05142019_scaffold_2713_18
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

18040..19020
DNA (981bp) protein (327aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000371EA7E
hprK; Serine kinase of the HPr protein, regulates carbohydrate metabolism
AR_MS4_05142019_scaffold_2713_19
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

19029..19352
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00035E4E01
Phosphocarrier protein HPr {ECO:0000313|EMBL:KIE58439.1}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
fruB; phosphotransferase system HPr-related protein
AR_MS4_05142019_scaffold_2713_20
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

19453..21207
DNA (1755bp) protein (585aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000378579B
ptsA; phosphoenolpyruvate-protein kinase
AR_MS4_05142019_scaffold_2713_21
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

21220..21966
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037E9099
gcd1; nucleoside-diphosphate-sugar pyrophosphorylase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
AR_MS4_05142019_scaffold_2713_22
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

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21968..22678
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003656E2A
hypothetical protein
Tax=GWF2_Bacteroidetes_41_31_curated
Displaying 23 items

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