ggKbase home page

AR_MS4_05142019_scaffold_2976_3

Organism: Alum_Rock_2019_MS4_Methylacidiphilum-related_63_13

near complete RP 46 / 55 MC: 4 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(4188..6056)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037D12B1 similarity UNIREF
DB: UNIREF100
  • Identity: 92.4
  • Coverage: 555.0
  • Bit_score: 1007
  • Evalue 4.70e-291
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.2
  • Coverage: 625.0
  • Bit_score: 793
  • Evalue 1.90e-226
rpoD; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) similarity KEGG
DB: KEGG
  • Identity: 66.7
  • Coverage: 618.0
  • Bit_score: 783
  • Evalue 2.40e-224

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methylacidiphilum fumariolicum → Methylacidiphilum → Methylacidiphilales → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1869
ATGATCATGCCGCGTAACCCAAGAACCAAAAGAAGCACCGCATCCCACCACCCGTCCTCCACGTCTCATTCCCGTAATGTCACCGACTCCTCCTCCCCCCCCTCCGCGCTGACCAAGGACCGTGCTTCCAAGGGAAACGGCCATCCGGTTCCTGCCACACCGGCGCCCGTCCCATCCGCCGCCGTCGTGGTTGAGGAACAGCAGCTAGCCAAGAAGCTCGCAAAGATCTGGTCCGAGGAGCCGCTGCGGCAAGAAAAGCTGCGAACGCTCGTCAAGCTCGCCAAGGAGCAGGGCTATCTCACCTTCGACGACATCAACGAAGCGCTACCCGATTGCGTGCCTCAACCCGACGAGATCGAGGCGATCATCGCGTTTCTGCGGGGCCTGGAGATTGACGTCATCGAGAGCTCGGAGGTGGATCGCCAGAAAAGTGCCGTCCCGGCGGACGTGGCGGTGCCCGAGGAAAAGGAGACCAAGCTCGATATCCTCGACGACCCGGTCCGGATGTACCTCCGGCAGATGGGACAGGTGCCTCTTCTGACGCGGGAAGAGGAGGTCGAGATTTCCAAGCGGATCGAAAATGCCGAGCTCATGGTGCAGAAGTGCCTCCACAGCTTCGGGTTCATCGCGAGGGAATATCTACATCTAGCCCGGAAGCTCGAACAGGGGAGGGAGCGCTTCGACCGGCTCATCCAGGACAAGCACATCGAGGGACGCGAGGCCTACATGAAGATCTTGCCCGGCCTCATGAGCAAGCTTGAGGAGAAGATCGAGGAGAGCGACGAGCTCTACGCCCGGTTGAGCGCTCTGCCGGCGAACTCGAAGGAGCGGGCGAAGATGGCCGCTGCTCTCGAGAAACAGCATCTTGGCTTGGAAAGGATCTTCCACCGCTTTTACTTCAAGCAGAAGACCGTAGAGGACCTGGTGCAGGTAAGCGAAGAGCGCTTTCAGGAGATCTGCCGGTGGGAGAGCGAGAGGAAGCGGCTTCGTGCTCAGGGCCGTGGAAGCAAGAACTCGGAGGCGCTCGCGGCGGTGGAGGAGCAGCTACAGCAGTTCCAGAAACAGGCTCATGCCAGCGTGGAGGAGTTCAAGAAGAAGCATAACGAGCTCAAGAAGTGGCTGCATCAGGCCATGCGGGCCAAAACCGAAATGGTCGAGGCCAATCTTCGCCTAGTCATCTCGATTGCGAAAAAATATACCAATCGCGGCCTCTCTTTCCTCGATCTCATTCAGGAAGGGAACATGGGGCTGATGAAGGCCGTCGAGAAGTTCGAATATCGGCGCGGCTACAAGTTCTCGACCTACGCTACCTGGTGGATTCGGCAGGCGATCACGCGGAGCATTGCGGATCAAGCCCGTACCATCCGGATCCCGGTGCACATGATCGAGACGATCAACAAGCTCATGCGGGTGCAGAAGCAGTTGATTCAAGAACTCGGCCGCGAGCCGAATCCGGAAGAGATTGCCGACGAGATCCAATTGAGCGTGGATCGCATCCGGGCGATCCTTAAGATGGCGCAGCAGCCGATCTCCCTCCAAAGCCAGGTCGGGGAGAGCGATGACACGACTTTTGGAGACTTCATCGAGGATAAGGCGGCGGAAAATCCCTCCGAGATGACCGCCTACTCCCTGTTAAAGGAAAAGATCCGGGACGTCCTTCACACGTTGACGGAACGGGAGCGAACGGTGATCGAGCAGCGATTCGGGCTGCTCGACGGATATCCTCGTACGCTGGAGGAGGTTGGCCGTCAGTTTCGCGTCACGCGGGAGCGGATCCGCCAGATCGAGGCAAAAGCGCTTCGGAAGATGCGTCATCCGACCCGGCTGCGTCATCTGGAGGGCTTTCTCGAGGCCGATCGAGGATTTTAG
PROTEIN sequence
Length: 623
MIMPRNPRTKRSTASHHPSSTSHSRNVTDSSSPPSALTKDRASKGNGHPVPATPAPVPSAAVVVEEQQLAKKLAKIWSEEPLRQEKLRTLVKLAKEQGYLTFDDINEALPDCVPQPDEIEAIIAFLRGLEIDVIESSEVDRQKSAVPADVAVPEEKETKLDILDDPVRMYLRQMGQVPLLTREEEVEISKRIENAELMVQKCLHSFGFIAREYLHLARKLEQGRERFDRLIQDKHIEGREAYMKILPGLMSKLEEKIEESDELYARLSALPANSKERAKMAAALEKQHLGLERIFHRFYFKQKTVEDLVQVSEERFQEICRWESERKRLRAQGRGSKNSEALAAVEEQLQQFQKQAHASVEEFKKKHNELKKWLHQAMRAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPNPEEIADEIQLSVDRIRAILKMAQQPISLQSQVGESDDTTFGDFIEDKAAENPSEMTAYSLLKEKIRDVLHTLTERERTVIEQRFGLLDGYPRTLEEVGRQFRVTRERIRQIEAKALRKMRHPTRLRHLEGFLEADRGF*