ggKbase home page

AR_MS4_05142019_scaffold_3082_11

Organism: Alum_Rock_2019_MS4_Methylacidiphilum-related_63_13

near complete RP 46 / 55 MC: 4 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(16260..16904)

Top 3 Functional Annotations

Value Algorithm Source
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.5
  • Coverage: 187.0
  • Bit_score: 235
  • Evalue 7.00e-59
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000381352F similarity UNIREF
DB: UNIREF100
  • Identity: 85.0
  • Coverage: 187.0
  • Bit_score: 319
  • Evalue 2.00e-84
def; N-formylmethionyl-tRNA deformylase similarity KEGG
DB: KEGG
  • Identity: 60.0
  • Coverage: 180.0
  • Bit_score: 216
  • Evalue 4.00e-54

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methylacidiphilum fumariolicum → Methylacidiphilum → Methylacidiphilales → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 645
CATGGATGCCGCAAAGGTTGCCGGCATTGTCAATCTGCCTACGTTTACGGTAGAACCAAAGTCTTCGCAAAGTCAGCAGCCGTGATTCTCCCGATCGTCCTTTTCGGCAACCCGATTCTTCGTCAGCCTGGCGCGCCCGTTCGGCGATTCGACCGGGATCTTCGCGAGTTCGCCGAGGACATGAGGGAAACCATGACCGCCAACCATGGGGTGGGACTCGCCGCTCAGCAGGTCTCCAAGGCCCTGCTCTTCGCGGTGATCGACGTCACCGCAGCCAAGACCTCCTCCACGATGATCGTCCGAGGCGAGCCCGTGCCGGTGGAAGAGCAGATGCCGCTCTTCCTGGCCAATCCCGTTCTTTCACTGACGAAGTCGAAGGAGATCGGGAACGAGGGCTGCTTGAGCTTCCCCGGCCTCCGGATCGACGTCCCGCGGTCCCGGCGCGTTTCGGTGCGTGCGCAAGACCTTCAAGGCAACCCCCTCGTCTTCGAAGCGAGCGGTTTTCTCGCCGTGGTCATTCAACACGAGATCGACCATCTCCACGGAAAGCTCTTCATCGACTATCTCAAGCCCGCGCAACGAAACGAGATCAAGGACGATCTCGCCCGGATCCGGCAGGGCCTGCCGGCGGTGAACTCGGAATAG
PROTEIN sequence
Length: 215
HGCRKGCRHCQSAYVYGRTKVFAKSAAVILPIVLFGNPILRQPGAPVRRFDRDLREFAEDMRETMTANHGVGLAAQQVSKALLFAVIDVTAAKTSSTMIVRGEPVPVEEQMPLFLANPVLSLTKSKEIGNEGCLSFPGLRIDVPRSRRVSVRAQDLQGNPLVFEASGFLAVVIQHEIDHLHGKLFIDYLKPAQRNEIKDDLARIRQGLPAVNSE*