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AR_MS4_05142019_scaffold_3082

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR_MS4_05142019_scaffold_3082_1
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(166..2532)
DNA (2367bp) protein (789aa)
phosphoketolase n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003731422
Putative phosphoketolase {ECO:0000313|EMBL:AEH40993.1}; TaxID=591154 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum.;"
phosphoketolase
AR_MS4_05142019_scaffold_3082_2
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(2678..5251)
DNA (2574bp) protein (858aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036805CD
topA; Topoisomerase IA
AR_MS4_05142019_scaffold_3082_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(5323..6411)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037BE79A
DNA protecting protein DprA {ECO:0000313|EMBL:EDY17102.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
smf; DNA uptake Rossmann fold nucleotide-binding protein
AR_MS4_05142019_scaffold_3082_4
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(6408..7487)
DNA (1080bp) protein (360aa)
3-dehydroquinate synthase {ECO:0000255|HAMAP-Rule:MF_00110}; EC=4.2.3.4 {ECO:0000255|HAMAP-Rule:MF_00110};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036041B2
aroB; 3-dehydroquinate synthetase
AR_MS4_05142019_scaffold_3082_5
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(7484..11005)
DNA (3522bp) protein (1174aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum kamchatkense Kam1.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036C0823
dnaE; DNA polymerase III, alpha subunit
AR_MS4_05142019_scaffold_3082_6
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(11102..13003)
DNA (1902bp) protein (634aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003825D85
uvrD; ATP-dependent DNA helicase UvrD/PcrA
AR_MS4_05142019_scaffold_3082_7
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13011..13862)
DNA (852bp) protein (284aa)
50S ribosomal protein L20 (EC:2.1.1.-)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037CFA1C
Tax=RBG_13_Deltaproteobacteria_61_14_curated
AR_MS4_05142019_scaffold_3082_8
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(13883..14833)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI0003713DA2
Putative lipopolysaccharide transport protein B (ABC superfamily, atp_bind) (LptB) (Modular protein) {ECO:0000313|EMBL:CCG91724.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
yhbG; ABC transporter ATPase
AR_MS4_05142019_scaffold_3082_9
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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14930..15841
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037FC47B
ywfI; heme peroxidase involved in anaerobic stress response
Predicted heme peroxidase involved in anaerobic stress response {ECO:0000313|EMBL:ACD82969.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_3082_10
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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15936..16181
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037D18C9
grxC; glutaredoxin
Glutaredoxin {ECO:0000313|EMBL:ACD82970.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
AR_MS4_05142019_scaffold_3082_11
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(16260..16904)
DNA (645bp) protein (215aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI000381352F
def; N-formylmethionyl-tRNA deformylase
Displaying 11 items

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