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BD02T64_scaffold_2021

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_2021_1

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35..916
DNA (882bp) protein (294aa)
Protein rarD n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XMP4_METNJ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN57609.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
protein rarD
BD02T64_scaffold_2021_2

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974..1201
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Amphritea japonica RepID=UPI0003757B77
Uncharacterized protein {ECO:0000313|EMBL:KKM91848.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_2021_3

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1213..1398
DNA (186bp) protein (62aa)
Complex sensory protein with histidine kinase domain containing protein n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5T327_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKM91848.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein
BD02T64_scaffold_2021_4
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1570..3144
DNA (1575bp) protein (525aa)
Histidine kinase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D9C1_9GAMM rbh
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:AHF00841.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" sour
BD02T64_scaffold_2021_5

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3860..4525
DNA (666bp) protein (222aa)
Protein containing plastocyanin/azurin family domain n=1 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) RepID=I1YH15_METFJ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN60780.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
protein containing plastocyanin/azurin family domain
BD02T64_scaffold_2021_6

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4512..6827
DNA (2316bp) protein (772aa)
HAMP domain/GGDEF domain/EAL domain-containing protein n=1 Tax=Pseudoalteromonas marina mano4 RepID=U1K2W3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN60779.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
HAMP domain/GGDEF domain/EAL domain-containing protein
BD02T64_scaffold_2021_7

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6808..7644
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SVX4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN60778.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
BD02T64_scaffold_2021_8

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7644..8066
DNA (423bp) protein (141aa)
Cyanoglobin, Hemoglobin-like protein HbN n=1 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) RepID=I1YH18_METFJ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN60777.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Cyanoglobin, Hemoglobin-like protein HbN
BD02T64_scaffold_2021_9

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comp(8077..9330)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) RepID=D4ZAD6_SHEVD
Uncharacterized protein {ECO:0000313|EMBL:KKN50009.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
BD02T64_scaffold_2021_10
Chlorobium chlorochromatii, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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comp(9345..11180)
DNA (1836bp) protein (612aa)
D-alanine-D-alanine ligase and related ATP-grasp enzymes-like protein n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AS13_CHLCH rbh
D-alanine-D-alanine ligase-like protein rbh
D-alanine-D-alanine ligase and related ATP-grasp enzymes-like protein {ECO:0000313|EMBL:ABB28212.1}; TaxID=340177 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodi
BD02T64_scaffold_2021_11

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comp(11237..12442)
DNA (1206bp) protein (402aa)
Transporter, major facilitator family n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N3V2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN55191.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
permease rbh
BD02T64_scaffold_2021_12
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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12653..13168
DNA (516bp) protein (172aa)
SH3 type 3 domain protein n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QIX9_METS6 rbh
sh3 type 3 domain-containing protein
SH3 domain-containing protein {ECO:0000313|EMBL:EUJ10267.1}; Flags: Precursor;; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methyl
BD02T64_scaffold_2021_13
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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13165..13989
DNA (825bp) protein (275aa)
Peptidase M48 Ste24p n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMV1_9PROT rbh
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:BAN36144.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitri
BD02T64_scaffold_2021_14
unknown

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comp(14038..14364)
DNA (327bp) protein (109aa)

This feature has no annotations

BD02T64_scaffold_2021_15
unknown

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comp(14389..15183)
DNA (795bp) protein (265aa)

This feature has no annotations

BD02T64_scaffold_2021_16
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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15641..16711
DNA (1071bp) protein (357aa)
fructose-bisphosphate aldolase class II (EC:4.1.2.13)
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI83225.1}; EC=4.1.2.13 {ECO:0000313|EMBL:AFI83225.1};; TaxID=754476 species="Bacteria; Proteobacteria; Gammaprote
Fructose-bisphosphate aldolase class II n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XFQ6_METNJ rbh
BD02T64_scaffold_2021_17
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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16789..17787
DNA (999bp) protein (333aa)
fructose-1,6-bisphosphatase, type I (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosph
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XFQ5_METNJ rbh
BD02T64_scaffold_2021_18
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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17837..18652
DNA (816bp) protein (272aa)
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleB
Triosephosphate isomerase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XFQ4_METNJ rbh
BD02T64_scaffold_2021_19

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18857..21169
DNA (2313bp) protein (771aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6QTE2_9ZZZZ rbh
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) (Modular protein) {ECO:0000313|EMBL:CBI10514.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.
hypothetical protein
Displaying 19 items

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