ggKbase home page

BD02T64_scaffold_2223

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_2223_1
unknown

Not on your lists

1..816
DNA (816bp) protein (272aa)

This feature has no annotations

BD02T64_scaffold_2223_2
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(996..2501)
DNA (1506bp) protein (502aa)
Ketoglutarate semialdehyde dehydrogenase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LNR8_9PROT rbh
Ketoglutarate semialdehyde dehydrogenase {ECO:0000313|EMBL:EKF06567.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" sour
ketoglutarate semialdehyde dehydrogenase
BD02T64_scaffold_2223_3
Shewanella piezotolerans, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2625..3569)
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B78BD9
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACJ30025.1}; TaxID=225849 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewan
BD02T64_scaffold_2223_4

Not on your lists

3770..4750
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI00037FF9BB rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF08987.1}; TaxID=1456128 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_34_B07.;"
hypothetical protein
BD02T64_scaffold_2223_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4875..5357
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI00037621F4
Uncharacterized protein {ECO:0000313|EMBL:EKE69828.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum
BD02T64_scaffold_2223_6

Not on your lists

5360..7021
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA536-G10 RepID=UPI00037EBC2F
Putative tricarboxylic transport membrane protein (TctA) {ECO:0000313|EMBL:AIF08989.1}; TaxID=1456128 species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeot
hypothetical protein
BD02T64_scaffold_2223_7
Rahnella aquatilis, Rahnella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7056..7841
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Rahnella RepID=E8XWW7_RAHSY rbh
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AFE57860.1}; TaxID=1151116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Rahnella.;" source="
BD02T64_scaffold_2223_8
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7857..9584
DNA (1728bp) protein (576aa)
Acetolactate synthase, large subunit n=1 Tax=Ruegeria mobilis F1926 RepID=R0DLL7_9RHOB rbh
Acetolactate synthase, large subunit {ECO:0000313|EMBL:ENZ89170.1}; TaxID=1265309 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeri
acetolactate synthase, large subunit rbh
BD02T64_scaffold_2223_9
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9641..10003
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036F909D rbh
NIPSNAP family protein {ECO:0000313|EMBL:EFH12688.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervical
NIPSNAP family containing protein
BD02T64_scaffold_2223_10
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10027..10656
DNA (630bp) protein (210aa)
Glutathione S-transferase-like protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9ECR1_9RHOB
Glutathione S-transferase {ECO:0000313|EMBL:KEJ94326.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter
glutathione S-transferase
BD02T64_scaffold_2223_11

Not on your lists

10700..11656
DNA (957bp) protein (319aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM70185.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative aldo/keto reductase family protein id=1789191 bin=GWD2_Deltaproteobacteria_55_8 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
aldo/keto reductase
BD02T64_scaffold_2223_12
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12206..12517)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LSL7_DINSH
Uncharacterized protein {ECO:0000313|EMBL:KCV83481.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium a
hypothetical protein
BD02T64_scaffold_2223_13
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

13033..14181
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00038292D9 rbh
hypothetical protein Tax=RBG_16_Chloroflexi_64_32_curated
BD02T64_scaffold_2223_14
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14187..14771)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036898A5 rbh
methyltransferase Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
BD02T64_scaffold_2223_15
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14799..15488)
DNA (690bp) protein (230aa)
polysaccharide deacetylase n=1 Tax=Rhizobium meliloti RepID=UPI0002D7D1C8 rbh
polysaccharide deacetylase
Polysaccharide / oligosaccharide deacetylase {ECO:0000313|EMBL:AEH83868.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
BD02T64_scaffold_2223_16
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15485..16633)
DNA (1149bp) protein (383aa)
glycosyl transferase (EC:2.4.1.-)
Rhamnosyl transferase related protein n=1 Tax=Roseovarius sp. 217 RepID=A3W1X8_9RHOB rbh
Rhamnosyl transferase related protein {ECO:0000313|EMBL:KJS44662.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Ros
BD02T64_scaffold_2223_17
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17295..18575)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ITF1_METNO rbh
Uncharacterized protein {ECO:0000313|EMBL:KAJ54729.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium m
hypothetical protein
BD02T64_scaffold_2223_18
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18581..19003)
DNA (423bp) protein (141aa)
Uncharacterized protein {ECO:0000313|EMBL:KAJ54728.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium m
BD02T64_scaffold_2223_19
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19435..19707
DNA (273bp) protein (91aa)
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase RfbC (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase RfbC {ECO:0000313|EMBL:AFO89730.1}; EC=5.1.3.13 {ECO:0000313|EMBL:AFO89730.1};; TaxID=383629 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterale
dTDP-4-dehydrorhamnose 3,5-epimerase RfbC n=1 Tax=Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107) RepID=I7F2V5_PHAIB
Displaying 19 items

View Taxonomy