ggKbase home page

BD02T64_scaffold_2888

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_2888_1
unknown

Not on your lists

comp(2..232)
DNA (231bp) protein (77aa)

This feature has no annotations

BD02T64_scaffold_2888_2
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249..686)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KFN6_MESAW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB42868.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium aust
BD02T64_scaffold_2888_3
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1126..2790
DNA (1665bp) protein (555aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI00036DE10F
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJS09492.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
extracellular solute-binding protein, family 5
BD02T64_scaffold_2888_4
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2790..3725
DNA (936bp) protein (312aa)
Putative oligopeptide ABC transporter, permease protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YT91_9GAMM rbh
Putative oligopeptide ABC transporter, permease protein {ECO:0000313|EMBL:EAS47596.1}; TaxID=314287 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; SAR92 clade.;" source="gamma prot
oppB; oligopeptide transport system permease oppB
BD02T64_scaffold_2888_5
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3725..4627
DNA (903bp) protein (301aa)
Oligopeptide ABC transporter permease protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YT90_9GAMM rbh
Oligopeptide transport system permease protein OppC {ECO:0000313|EMBL:ETN92316.1}; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455
oligopeptide transporter permease OppC
BD02T64_scaffold_2888_6
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4673..6343
DNA (1671bp) protein (557aa)
Putative peptide transport atp-binding abc transporter protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YT89_9GAMM rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJS09495.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
peptide ABC transporter ATP-binding protein rbh
BD02T64_scaffold_2888_7
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6370..7758)
DNA (1389bp) protein (463aa)
10 kDa chaperonin n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DCE9_9GAMM rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:KHD10131.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarga
ATP-dependent RNA helicase DbpA
BD02T64_scaffold_2888_8

Not on your lists

8031..8171
DNA (141bp) protein (47aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK64847.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_2888_9
unknown

Not on your lists

comp(8588..9067)
DNA (480bp) protein (160aa)

This feature has no annotations

BD02T64_scaffold_2888_10
Paraglaciecola arctica, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9622..10089)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Glaciecola arctica BSs20135 RepID=K6Z2I3_9ALTE rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAC17670.1}; TaxID=493475 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola
BD02T64_scaffold_2888_11
Psychromonas sp. CNPT3, Psychromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10204..10431)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3 RepID=M4U7Q2_9GAMM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH81651.1}; TaxID=314282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Psychromonadaceae; Psychromonas.;" source="Psychromonas sp.
BD02T64_scaffold_2888_12
CG_Mariprof_05, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10548..11699)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI00037A0C06
nhaA; pH-dependent sodium/proton antiporter; K03313 Na+:H+ antiporter, NhaA family Tax=CG_Mariprof_05
nhaA; Na(+)/H(+) antiporter nhaA
BD02T64_scaffold_2888_13
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

12173..13087
DNA (915bp) protein (305aa)
Thiosulfate sulfurtransferase n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0CDH6_ACAM1 rbh
thiosulfate sulfurtransferase
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017
BD02T64_scaffold_2888_14

Not on your lists

13084..13809
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00035C56C3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL71982.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
permease
BD02T64_scaffold_2888_15
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13969..14421
DNA (453bp) protein (151aa)
Ferritin Dps family protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C129_NITHN rbh
ferritin
Ferritin Dps family protein {ECO:0000313|EMBL:ADE14586.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halo
BD02T64_scaffold_2888_16
Pseudomonas oryzihabitans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14560..15321)
DNA (762bp) protein (254aa)
glycerophosphoryl diester phosphodiesterase n=1 Tax=Pseudomonas sp. 313 RepID=UPI0002D26FF8 rbh
Glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:KIZ49208.1}; TaxID=47885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pse
phosphodiesterase
BD02T64_scaffold_2888_17
R_RIF_OD1_06_39_25, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

15522..16085
DNA (564bp) protein (188aa)
Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8LDE8_THAPS rbh
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_06_39_25_curated
phosphoglucomutase
BD02T64_scaffold_2888_18
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16143..16778)
DNA (636bp) protein (212aa)
msrA; peptide methionine sulfoxide reductase (EC:1.8.4.11) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
peptide methionine sulfoxide reductase (EC:1.8.4.11)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI00035F07E7 rbh
BD02T64_scaffold_2888_19
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16876..17550
DNA (675bp) protein (225aa)
Disulfide-bond oxidoreductase YfcG {ECO:0000313|EMBL:EXI65738.1}; EC=1.8.4.- {ECO:0000313|EMBL:EXI65738.1};; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibac
glutathione S-transferase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000311B5A3 rbh
glutathione S-transferase domain-containing protein
BD02T64_scaffold_2888_20
Halomonas hydrothermalis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17734..19881)
DNA (2148bp) protein (716aa)
hypothetical protein n=1 Tax=Oligella ureolytica RepID=UPI00036A9FF4 rbh
Prepilin peptidase {ECO:0000313|EMBL:KHJ51100.1}; TaxID=115561 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas hydrothermalis.
SEC-C motif family protein
BD02T64_scaffold_2888_21
unknown

Not on your lists

comp(19930..20052)
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 21 items

View Taxonomy