ggKbase home page

BD02T64_scaffold_1290

Search features with annotation key words

Displaying items 1-30 of 69 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1290_1
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..102)
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPL6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL46758.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_2
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(241..1131)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPL5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL46757.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_3
Bermanella marisrubri, Bermanella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1166..2254)
DNA (1089bp) protein (363aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=207949 species="Bacteria; Proteobacteria; Gammap
response regulator receiver (CheY-like) modulated CheB methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Bermanella marisrubri RepID=Q1N2W2_9GAMM
BD02T64_scaffold_1290_4
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2294..2962)
DNA (669bp) protein (223aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=377629 species="Bacteria; Proteobacteria; Gammaproteobacteria;
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Teredinibacter turnerae (strain ATCC 39867 / T7901) RepID=C5BSF3_TERTT
chemotaxis protein CheD
BD02T64_scaffold_1290_5
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2959..3846)
DNA (888bp) protein (296aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillal
Chemotaxis protein methyltransferase n=1 Tax=Oleispira antarctica RB-8 RepID=R4YT09_OLEAN
MCP methyltransferase, CheR-type
BD02T64_scaffold_1290_6
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3900..4442)
DNA (543bp) protein (181aa)
CheW-like protein n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21G16_SACD2 rbh
CheW-like protein
CheW-like protein {ECO:0000313|EMBL:ABD82363.1}; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.;" source="Saccharophagus degrad
BD02T64_scaffold_1290_7
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4477..6627)
DNA (2151bp) protein (717aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" sou
chemotaxis protein histidine kinase and related kinase (EC:2.7.3.-)
CheA signal transduction histidine kinase n=1 Tax=Oleispira antarctica RB-8 RepID=R4YL48_OLEAN rbh
BD02T64_scaffold_1290_8
Bermanella marisrubri, Bermanella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6716..7078)
DNA (363bp) protein (121aa)
CheY-like receiver protein n=1 Tax=Bermanella marisrubri RepID=Q1N2W8_9GAMM rbh
CheY-like receiver protein {ECO:0000313|EMBL:EAT12551.1}; TaxID=207949 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Bermanella.;" source="Bermanella marisrubri.;"
CheY-like receiver protein
BD02T64_scaffold_1290_9
Bermanella marisrubri, Bermanella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7177..7458)
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:EAT12550.1}; TaxID=207949 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Bermanella.;" source="Bermanella marisrubri.;"
BD02T64_scaffold_1290_10
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7667..8113)
DNA (447bp) protein (149aa)
flagellar biosynthesis chaperone n=1 Tax=Pseudomonas thermotolerans RepID=UPI00036E586A
fliJ; flagellar protein
Flagellar protein {ECO:0000313|EMBL:CBL46754.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_11
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8110..9453)
DNA (1344bp) protein (448aa)
Flagellum-specific atp synthase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPL1_9GAMM
fliI; flagellum-specific atp synthase
Flagellum-specific atp synthase {ECO:0000313|EMBL:CBL46753.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_12
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9450..10364)
DNA (915bp) protein (305aa)
Flagellar assembly protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPL0_9GAMM
fliH; flagellar assembly protein
Flagellar assembly protein {ECO:0000313|EMBL:CBL46752.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_13
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10366..11403)
DNA (1038bp) protein (346aa)
Flagellar motor switch protein FliG n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPK9_9GAMM
fliG; flagellar motor switch protein
Flagellar motor switch protein FliG {ECO:0000256|PIRNR:PIRNR003161}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_14
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11396..13093)
DNA (1698bp) protein (566aa)
Flagellar M-ring protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPK8_9GAMM
fliF; flagellar basal-body M-ring protein
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_15
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13171..13524)
DNA (354bp) protein (118aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPK7_9GAMM rbh
fliE; flagellar hook-basal body complex protein
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma pro
BD02T64_scaffold_1290_16
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13612..15027)
DNA (1416bp) protein (472aa)
Transcriptional activator n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPK6_9GAMM
fleR; transcriptional activator
Transcriptional activator {ECO:0000313|EMBL:CBL46748.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_17
Pseudomonas syringae group genomosp. 3, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15082..16377)
DNA (1296bp) protein (432aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=629265 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae;
sensor histidine kinase n=2 Tax=Pseudomonas fuscovaginae RepID=UPI00028A362E
sensor histidine kinase
BD02T64_scaffold_1290_18
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16923..18362)
DNA (1440bp) protein (480aa)
Flagellar regulatory protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VPK4_9GAMM
fleQ; flagellar regulatory protein
Flagellar regulatory protein {ECO:0000313|EMBL:CBL46746.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
BD02T64_scaffold_1290_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18573..19304)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N254_RHILT rbh
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KAJ35741.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agroba
fabG; 3-oxoacyl-ACP reductase
BD02T64_scaffold_1290_20
unknown

Not on your lists

comp(19309..19743)
DNA (435bp) protein (145aa)

This feature has no annotations

BD02T64_scaffold_1290_21
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(19721..21340)
DNA (1620bp) protein (540aa)
hypothetical protein n=2 Tax=unclassified Alphaproteobacteria (miscellaneous) RepID=UPI000360AF43 rbh
hypothetical protein Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
GMC oxidoreductase
BD02T64_scaffold_1290_22
Pseudoalteromonas elyakovii, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21353..21814)
DNA (462bp) protein (154aa)
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabA/FabZ n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YIK6_9BURK rbh
Hydroxymyristoyl-ACP dehydratase {ECO:0000313|EMBL:KID32783.1}; TaxID=81037 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source
beta-hydroxyacyl-ACP dehydratase
BD02T64_scaffold_1290_23
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(21862..23073)
DNA (1212bp) protein (404aa)
acyl-CoA reductase n=1 Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B38457
Acyl-CoA reductase (LuxC) Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
acyl-CoA reductase
BD02T64_scaffold_1290_24
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(23060..24106)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PLR2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC21799.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
acyl-protein synthetase
BD02T64_scaffold_1290_25
Exiguobacterium pavilionensis, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24099..25553)
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Exiguobacterium pavilionensis RW-2 RepID=U1MUR1_9BACL rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG65691.1}; TaxID=1345023 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacteri
AMP-dependent synthetase and ligase
BD02T64_scaffold_1290_26
SAR116 cluster alpha proteobacterium HIMB100, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25557..25799)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G6A227_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EHI48762.1}; TaxID=909943 species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster.;" source="SAR116 cluster alpha proteobacterium HIMB100.;"
hypothetical protein
BD02T64_scaffold_1290_27
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26084..26449
DNA (366bp) protein (122aa)
Fe/S biogenesis protein NfuA n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2FZD1_9GAMM
hypothetical protein
Fe/S biogenesis protein NfuA {ECO:0000256|HAMAP-Rule:MF_01637, ECO:0000256|SAAS:SAAS00035357}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae
BD02T64_scaffold_1290_28
Selenomonas sp. oral taxon 149, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

26682..28403
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036A4D62 rbh
Radical SAM domain protein {ECO:0000313|EMBL:EFM23335.1}; TaxID=864563 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. oral taxon
AMP-dependent synthetase and ligase
BD02T64_scaffold_1290_29
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

28419..29069
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000375270D rbh
Uncharacterized protein {ECO:0000313|EMBL:CDC21792.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
BD02T64_scaffold_1290_30
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29182..30315)
DNA (1134bp) protein (378aa)
Fibrinogen-like protein n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4H5R2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KID54978.1}; TaxID=43657 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoa
putative lipoprotein
Displaying items 1-30 of 69 in total

View Taxonomy