ggKbase home page

BD02T64_scaffold_1770

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1770_1
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30..779
DNA (750bp) protein (250aa)
electron transfer flavoprotein subunit beta n=1 Tax=Microbulbifer variabilis RepID=UPI000372EA8F rbh
electron transfer flavoprotein subunit beta rbh
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:EIF43088.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
BD02T64_scaffold_1770_2
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

779..1708
DNA (930bp) protein (310aa)
Electron transfer flavoprotein subunit alpha n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KUJ2_SIMAS
electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:AFU97627.1}; TaxID=1117647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 2
BD02T64_scaffold_1770_3
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1798..2292)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Microbulbifer agarilyticus RepID=UPI0002557F16
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
hypothetical protein
BD02T64_scaffold_1770_4
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2302..2622)
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS08337.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
BD02T64_scaffold_1770_5
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2615..3229)
DNA (615bp) protein (205aa)
RNA polymerase factor sigma-70 (EC:2.7.7.6)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=1 Tax=uncultured Oceanospirillales bacterium HF4000_21D01 RepID=E7C8D9_9GAMM
putative RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
BD02T64_scaffold_1770_6
unknown

Not on your lists

comp(3247..3627)
DNA (381bp) protein (127aa)

This feature has no annotations

BD02T64_scaffold_1770_7
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3724..4536)
DNA (813bp) protein (271aa)
xthA; exonuclease III (EC:3.1.11.2)
Exonuclease III {ECO:0000313|EMBL:ENY76012.1}; EC=3.1.11.2 {ECO:0000313|EMBL:ENY76012.1};; TaxID=1227924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseu
exodeoxyribonuclease III n=1 Tax=Pseudomonas sp. CBZ-4 RepID=UPI00034A5886
BD02T64_scaffold_1770_8
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4552..6615)
DNA (2064bp) protein (688aa)
Tail-specific protease prc n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTL7_9GAMM rbh
Peptidase S41 {ECO:0000313|EMBL:KJS08340.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
tail-specific protease periplasmic
BD02T64_scaffold_1770_9

Not on your lists

6893..7663
DNA (771bp) protein (257aa)
Glucose and ribitol dehydrogenase-like protein 1 n=1 Tax=Halomonas boliviensis LC1 RepID=G9EC98_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL97990.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
short-chain dehydrogenase/reductase SDR
BD02T64_scaffold_1770_10

Not on your lists

7678..8118
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Halomonas sp. A3H3 RepID=T2L6W7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL97989.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BD02T64_scaffold_1770_11
Alcanivorax borkumensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8301..9281
DNA (981bp) protein (327aa)
mdh; malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01517}; EC=1.1.1.37 {ECO:0000255|HAMAP-Rule:MF_01517};; TaxID=393595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivo
Malate dehydrogenase n=1 Tax=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) RepID=MDH_ALCBS rbh
BD02T64_scaffold_1770_12

Not on your lists

9456..9968
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Marinobacter lipolyticus SM19 RepID=R8B4K9_9ALTE rbh
Uncharacterized protein {ECO:0000313|EMBL:KKK84069.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
BD02T64_scaffold_1770_13

Not on your lists

10014..10490
DNA (477bp) protein (159aa)
Bacterioferritin comigratory protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTN8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKK84068.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
bcp; bacterioferritin comigratory protein
BD02T64_scaffold_1770_14
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10594..10929
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AAA300-D14 RepID=UPI00036731DA rbh
Preprotein translocase subunit YidC {ECO:0000313|EMBL:KJS08163.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
protein translocase subunit yajC
BD02T64_scaffold_1770_15
marine gamma proteobacterium HTCC2143, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11001..12002
DNA (1002bp) protein (334aa)
Pyridoxal phosphate-dependent deaminase (EC:3.5.99.7) rbh
D-cysteine desulfhydrase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YDF3_9GAMM rbh
D-cysteine desulfhydrase {ECO:0000313|EMBL:EAW31256.1}; TaxID=247633 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; BD1-7 clade.;" source="marine gamma proteobacterium HTCC2143.;"
BD02T64_scaffold_1770_16
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12049..13392
DNA (1344bp) protein (448aa)
Putative sodium/alanine symporter n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTN5_9GAMM rbh
Amino-acid carrier protein AlsT {ECO:0000313|EMBL:ETN92327.1}; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
sodium:alanine symporter family protein
BD02T64_scaffold_1770_17
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13501..14406
DNA (906bp) protein (302aa)
ushA; 5'-nucleotidase (EC:3.1.3.5) rbh
5-nucleotidase n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PGU2_CELJU rbh
5'-nucleotidase {ECO:0000313|EMBL:KJS08164.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
BD02T64_scaffold_1770_18
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14495..15268)
DNA (774bp) protein (258aa)
Membrane protein, putative n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTN2_9GAMM rbh
Membrane protein {ECO:0000313|EMBL:KJS10009.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
protein of unknown function DUF81
BD02T64_scaffold_1770_19
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15408..16382
DNA (975bp) protein (325aa)
Transcriptional regulator CysB n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTN1_9GAMM rbh
CysB family transcriptional regulator {ECO:0000313|EMBL:KJS10008.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
cysB; transcriptional regulator CysB
BD02T64_scaffold_1770_20
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16482..16817)
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=1 Tax=Teredinibacter turnerae (strain ATCC 39867 / T7901) RepID=C5BU78_TERTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR11910.1}; TaxID=377629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadales genera incertae sedis; Teredinibacter.;" so
BD02T64_scaffold_1770_21
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16847..17578)
DNA (732bp) protein (244aa)
phosphoadenylylsulfate reductase (thioredoxin) (EC:1.8.4.8)
Phosphoadenosine phosphosulfate reductase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTM9_9GAMM rbh
Phosphoadenosine phosphosulfate reductase {ECO:0000313|EMBL:KJS05258.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
BD02T64_scaffold_1770_22
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17894..18511
DNA (618bp) protein (206aa)
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTM8_9GAMM rbh
Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein {ECO:0000313|EMBL:EAS47459.1}; TaxID=314287 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; SAR92 clade.
thrH; phosphoserine phosphatase
BD02T64_scaffold_1770_23

Not on your lists

comp(18548..19924)
DNA (1377bp) protein (459aa)
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-)
Para-aminobenzoate synthase component I n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTT5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL94665.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1770_24

Not on your lists

20110..20427
DNA (318bp) protein (106aa)
Rieske (2Fe-2S) region n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21K47_SACD2 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL94666.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Rieske (2Fe-2S) region
BD02T64_scaffold_1770_25

Not on your lists

20459..20941
DNA (483bp) protein (161aa)
Ribonuclease regulator RraA n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B4C4_PSEAC rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL94667.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
menG; Regulator of ribonuclease activity A
BD02T64_scaffold_1770_26
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21054..21377
DNA (324bp) protein (108aa)
Cytochrome c n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4J5G5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS06814.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
BD02T64_scaffold_1770_27
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21698..22261)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Amphritea japonica RepID=UPI000374AF53 rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH68535.1}; TaxID=1620392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Spongiibacter.;" source="Spongiibacter s
hypothetical protein
BD02T64_scaffold_1770_28
Cycloclasticus zancles, Cycloclasticus, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22486..23781)
DNA (1296bp) protein (432aa)
isocitrate lyase n=1 Tax=Dasania marina RepID=UPI00036EAFFE
icl; Isocitrate lyase family protein
Isocitrate lyase {ECO:0000313|EMBL:AGS39590.1}; TaxID=1198232 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Cycloclasticus.;" source="Cycloclasticus zancl
Displaying 28 items

View Taxonomy