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BD02T64_scaffold_1879

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1879_1
gamma proteobacterium IMCC1989, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(42..950)
DNA (909bp) protein (303aa)
Cytochrome c oxidase polypeptide III n=1 Tax=gamma proteobacterium IMCC1989 RepID=F3LDN2_9GAMM rbh
Cytochrome c oxidase polypeptide III {ECO:0000313|EMBL:EGG94997.1}; TaxID=937772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales.;" source="gamma proteobacterium IMCC1989.;"
cytochrome C oxidase subunit 3 rbh
BD02T64_scaffold_1879_2
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(996..1547)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI0003685B40 rbh
Cysteine synthase {ECO:0000313|EMBL:KJS09358.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
cytochrome C oxidase assembly protein
BD02T64_scaffold_1879_3
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1566..3119)
DNA (1554bp) protein (518aa)
Cytochrome c oxidase, subunit I n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YUZ4_9GAMM
Cytochrome oxidase subunit I {ECO:0000313|EMBL:KJS09357.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
cytochrome-c oxidase
BD02T64_scaffold_1879_4
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3134..4282)
DNA (1149bp) protein (383aa)
Cytochrome c oxidase subunit 2 {ECO:0000256|RuleBase:RU004024}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU004024};; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteo
cytochrome B559 subunit alpha n=1 Tax=Microbulbifer variabilis RepID=UPI00035EF0C8 rbh
coxB; cytochrome c oxidase subunit II
BD02T64_scaffold_1879_5
gamma proteobacterium IMCC2047, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4457..5782
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI00037723A9 rbh
DNA-damage-inducible protein F {ECO:0000313|EMBL:EGH00161.1}; TaxID=434085 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium IMCC2047.;"
MATE efflux family protein
BD02T64_scaffold_1879_6
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5854..6510
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI000381907B rbh
Uncharacterized protein {ECO:0000313|EMBL:KFJ89939.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-
hypothetical protein
BD02T64_scaffold_1879_7
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6507..6752)
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PH31_CELJU rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE85404.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicu
BD02T64_scaffold_1879_8
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6870..7436
DNA (567bp) protein (189aa)
Transferase hexapeptide repeat protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YUZ9_9GAMM rbh
Anhydrase {ECO:0000313|EMBL:KJS09354.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
yrdA; protein YrdA
BD02T64_scaffold_1879_9
Neisseria elongata, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7457..7780)
DNA (324bp) protein (108aa)
Putative phage shock operon rhodanese PspE n=1 Tax=Neisseria elongata subsp. glycolytica ATCC 29315 RepID=D4DT50_NEIEG rbh
sulfurtransferase
Putative phage shock operon rhodanese PspE {ECO:0000313|EMBL:EFE49051.1}; Sulfurtransferase {ECO:0000313|EMBL:AJE19353.1}; TaxID=546263 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseria
BD02T64_scaffold_1879_10

Not on your lists

comp(7799..8620)
DNA (822bp) protein (274aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV00_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKK69989.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1879_11
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8690..9592)
DNA (903bp) protein (301aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KN36_SIMAS rbh
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprop
BD02T64_scaffold_1879_12

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comp(9670..10242)
DNA (573bp) protein (191aa)
tRNA threonylcarbamoyladenosine biosynthesis protein RimN n=1 Tax=Pseudomonas nitroreducens RepID=UPI0002DC671A rbh
Uncharacterized protein {ECO:0000313|EMBL:KKK47524.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Sua5/YciO/YrdC/YwlC family protein
BD02T64_scaffold_1879_13
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10254..10760)
DNA (507bp) protein (169aa)
purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV03_9GAMM rbh
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
BD02T64_scaffold_1879_14
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10821..11945)
DNA (1125bp) protein (375aa)
DNA protecting protein DprA n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3C2_NITHN
Uncharacterized protein {ECO:0000313|EMBL:KJS09350.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
DNA protecting protein DprA
BD02T64_scaffold_1879_15
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12055..13071)
DNA (1017bp) protein (339aa)
Peptidoglycan-binding LysM n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XNB4_PSEMY rbh
Peptidoglycan-binding protein {ECO:0000313|EMBL:KJS09349.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
peptidoglycan-binding LysM
BD02T64_scaffold_1879_16

Not on your lists

13159..13722
DNA (564bp) protein (188aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=DEF_CELJU rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL47914.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1879_17

Not on your lists

13753..14727
DNA (975bp) protein (325aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI00035D5143 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL47915.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1879_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14724..16028
DNA (1305bp) protein (435aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752, ECO:0000313|EMBL:CAY46301.1}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=216595 species="Bacteria; Proteobacteri
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Pseudomonas fluorescens (strain SBW25) RepID=C3KE46_PSEFS rbh
rsmB; ribosomal RNA small subunit methyltransferase B
BD02T64_scaffold_1879_19
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16109..17491
DNA (1383bp) protein (461aa)
Potassium uptake protein TrkA n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV10_9GAMM rbh
Potassium transporter peripheral membrane component {ECO:0000313|EMBL:KJS09345.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.
trkA; potassium transporter peripheral membrane component
BD02T64_scaffold_1879_20
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17509..18960
DNA (1452bp) protein (484aa)
Trk system potassium uptake protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV11_9GAMM rbh
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
potassium uptake protein TrkH
BD02T64_scaffold_1879_21
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18986..19312
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium BDW918 RepID=I2JFT6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIF41838.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
hypothetical protein
BD02T64_scaffold_1879_22
Photobacterium sp. AK15, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19327..19920
DNA (594bp) protein (198aa)
Putative pseudouridine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00587}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00587};; TaxID=1056511 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrion
Putative pseudouridine methyltransferase n=1 Tax=Photobacterium sp. AK15 RepID=L8JDK1_9GAMM rbh
hypothetical protein rbh
BD02T64_scaffold_1879_23
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19956..20336)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Cellvibrio sp. BR RepID=I3I8Y9_9GAMM
Aldehyde-activating protein {ECO:0000313|EMBL:KJE46880.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas v
hypothetical protein
BD02T64_scaffold_1879_24
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20390..21529)
DNA (1140bp) protein (380aa)
Hypothetical extracellular solute-binding protein, family 7 n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV13_9GAMM
Hypothetical extracellular solute-binding protein, family 7 {ECO:0000313|EMBL:EAS47895.1}; TaxID=314287 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; SAR92 clade.;" source="gamma
extracellular solute-binding protein
BD02T64_scaffold_1879_25
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21599..22660)
DNA (1062bp) protein (354aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=314287 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; SAR92 clade.;" source="gamma
DNA helicase II n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV14_9GAMM
uvrD; DNA-dependent helicase II
Displaying 25 items

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