ggKbase home page

BD02T64_scaffold_1880

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1880_1
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1430)
DNA (1428bp) protein (476aa)
Putative DNA methylase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2KMB1_9PROT rbh
Putative DNA methylase {ECO:0000313|EMBL:EKF06944.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira
putative DNA methylase
BD02T64_scaffold_1880_2
RifOxyB12_full_OP3_50_7_curated, Omnitrophica, Bacteria

Not on your lists

comp(1590..1907)
DNA (318bp) protein (106aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07IE8_RHOP5 rbh
XRE family plasmid maintenance system antidote protein Tax=RifOxyB12_full_OP3_50_7_curated
XRE family plasmid maintenance system antidote protein
BD02T64_scaffold_1880_3
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1924..2208)
DNA (285bp) protein (95aa)
Plasmid maintenance system killer n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGF1_NITHX rbh
plasmid maintenance system killer protein
Tax=BJP_08E140C01_Roseovarius_63_250
BD02T64_scaffold_1880_4

Not on your lists

2944..3987
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Entamoeba invadens IP1 RepID=L7FM23_ENTIV rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL85808.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
plasmid replication initiator protein-like protein
BD02T64_scaffold_1880_5
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4097..4750
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4X0T1_RHOS5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABP73245.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaer
BD02T64_scaffold_1880_6
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4750..4998
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:EYD75943.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrob
BD02T64_scaffold_1880_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5034..6317)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHH7_9RHIZ rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB49957.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
BD02T64_scaffold_1880_8
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6314..6643)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T3G0_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EAP78470.1}; TaxID=314267 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter sp
BD02T64_scaffold_1880_9
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6983..7264)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SLB8_9RHOB rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE47976.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter ind
BD02T64_scaffold_1880_10
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7264..7590)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UGZ9_RHIRD rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ53732.1}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringen
hypothetical protein
BD02T64_scaffold_1880_11
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7587..7832)
DNA (246bp) protein (82aa)
UPI0003CFEDD1 related cluster n=1 Tax=unknown RepID=UPI0003CFEDD1 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ65952.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
BD02T64_scaffold_1880_12
unknown

Not on your lists

8112..8315
DNA (204bp) protein (68aa)

This feature has no annotations

BD02T64_scaffold_1880_13
unknown

Not on your lists

comp(8368..8676)
DNA (309bp) protein (103aa)

This feature has no annotations

BD02T64_scaffold_1880_14
unknown

Not on your lists

8742..9110
DNA (369bp) protein (123aa)

This feature has no annotations

BD02T64_scaffold_1880_15
unknown

Not on your lists

comp(9293..9787)
DNA (495bp) protein (165aa)

This feature has no annotations

BD02T64_scaffold_1880_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10065..12203
DNA (2139bp) protein (713aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PAJ0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35363.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
TRAG family protein
BD02T64_scaffold_1880_17
unknown

Not on your lists

12196..12570
DNA (375bp) protein (125aa)

This feature has no annotations

BD02T64_scaffold_1880_18
unknown

Not on your lists

comp(12555..12929)
DNA (375bp) protein (125aa)

This feature has no annotations

BD02T64_scaffold_1880_19
unknown

Not on your lists

comp(12933..13265)
DNA (333bp) protein (111aa)

This feature has no annotations

BD02T64_scaffold_1880_20
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13470..14375)
DNA (906bp) protein (302aa)
Peptidase M, neutral zinc metallopeptidase, zinc-binding site n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PYP0_9RHIZ rbh
Peptidase M, neutral zinc metallopeptidase, zinc-binding site {ECO:0000313|EMBL:EKF57860.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/
peptidase M, neutral zinc metallopeptidase, zinc-binding site
BD02T64_scaffold_1880_21
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14640..15185)
DNA (546bp) protein (182aa)
Resolvase, N-terminal domain n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FU69_ACICJ rbh
DNA-invertase from lambdoid prophage e14 {ECO:0000313|EMBL:KDM65709.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source
resolvase domain-containing protein
BD02T64_scaffold_1880_22
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15283..17937)
DNA (2655bp) protein (885aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium BDW918 RepID=I2JI67_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIF42669.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
hypothetical protein
BD02T64_scaffold_1880_23
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17942..19129)
DNA (1188bp) protein (396aa)
YeeC-like protein n=1 Tax=Roseovarius sp. 217 RepID=A3W6B7_9RHOB rbh
YeeC-like protein {ECO:0000313|EMBL:EAQ23753.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
hypothetical protein
BD02T64_scaffold_1880_24
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19122..21191)
DNA (2070bp) protein (690aa)
Sea12 n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CQY6_9RHOB rbh
Sea12 {ECO:0000313|EMBL:EEX08740.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silicibacter lacuscaerulensis ITI-1157.
Pseudomurein-binding repeat
BD02T64_scaffold_1880_25
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21196..22659)
DNA (1464bp) protein (488aa)
DNA methylase n=1 Tax=Pseudomonas aeruginosa CI27 RepID=K1CQ40_PSEAI
Lactate dehydrogenase {ECO:0000313|EMBL:EZQ14914.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanen
type II restriction enzyme, methylase subunit YeeA
Displaying 25 items

View Taxonomy