ggKbase home page

BD02T64_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 170 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_238_1
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2098)
DNA (2097bp) protein (699aa)
Uncharacterized protein n=1 Tax=Desulfovibrio vulgaris (strain RCH1) RepID=E3IQQ4_DESVR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP86900.1}; TaxID=573059 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovib
BD02T64_scaffold_238_2
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2603..3799)
DNA (1197bp) protein (399aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9P5_VARPE rbh
acyl-CoA transferase/carnitine dehydratase Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
L-carnitine dehydratase/bile acid-inducible protein f
BD02T64_scaffold_238_3
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4037..5005
DNA (969bp) protein (323aa)
NHL repeat containing protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJF7_METS4
NHL repeat-containing protein
NHL repeat containing protein {ECO:0000313|EMBL:ACA15895.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.
BD02T64_scaffold_238_4
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5045..7498
DNA (2454bp) protein (818aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae
Signal transduction histidine kinase n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D0N6_DESAJ
signal transduction histidine kinase
BD02T64_scaffold_238_5
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7545..8510)
DNA (966bp) protein (322aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BA01_PARDP rbh
oligopeptide/dipeptide ABC transporter ATPase rbh
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABL72345.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus
BD02T64_scaffold_238_6
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8507..9499)
DNA (993bp) protein (331aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BA02_PARDP rbh
oligopeptide/dipeptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABL72346.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus
BD02T64_scaffold_238_7
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9499..10377)
DNA (879bp) protein (293aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BA03_PARDP
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABL72347.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacterace
BD02T64_scaffold_238_8
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10379..11356)
DNA (978bp) protein (326aa)
ABC transporter permease n=1 Tax=Paracoccus sp. N5 RepID=UPI0003633832 rbh
binding-protein-dependent transport systems inner membrane component rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABL72348.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobactera
BD02T64_scaffold_238_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11400..12974)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Amphimedon queenslandica RepID=I1EUA4_AMPQE rbh
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETX03298.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus En
family 5 extracellular solute-binding protein
BD02T64_scaffold_238_10
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13092..14033)
DNA (942bp) protein (314aa)
LysR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F198 rbh
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABL72350.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Para
BD02T64_scaffold_238_11
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14140..15771
DNA (1632bp) protein (544aa)
Amidohydrolase n=1 Tax=Achromobacter piechaudii HLE RepID=J4YZY7_9BURK rbh
Amidohydrolase {ECO:0000313|EMBL:EJO32616.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HL
amidohydrolase
BD02T64_scaffold_238_12
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15768..16715
DNA (948bp) protein (316aa)
Cobalamin synthesis protein P47K n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1G2_THIK1 rbh
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ADG30958.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K1
BD02T64_scaffold_238_13
Oceanobacillus oncorhynchi, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16828..17883
DNA (1056bp) protein (352aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G6H2_9DELT
Monocarboxylate 2-oxoacid-binding periplasmic protein {ECO:0000313|EMBL:CEI82641.1}; Flags: Precursor;; TaxID=545501 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;"
family 7 extracellular solute-binding protein
BD02T64_scaffold_238_14
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17924..20077
DNA (2154bp) protein (718aa)
histidine kinase n=1 Tax=Desulfovibrio desulfuricans RepID=UPI00035F64FF rbh
sensory box histidine kinase/response regulator protein
Sensory box histidine kinase/response regulator protein {ECO:0000313|EMBL:ACN18017.1}; TaxID=177437 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desul
BD02T64_scaffold_238_15
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20101..20607)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSF6_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EDP64226.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
BD02T64_scaffold_238_16
Shewanella sp. YQH10, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20822..21733)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI000361E6E2 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KFZ37240.1}; TaxID=1515746 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewan
transcriptional regulator, LysR family protein
BD02T64_scaffold_238_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21851..22456
DNA (606bp) protein (202aa)
acpD; ACP phosphodieterase (EC:3.1.4.14); K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI00037B25EC rbh
NAD(P)H dehydrogenase (quinone)
BD02T64_scaffold_238_18
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22624..23364
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036975E4
amino acid ABC transporter periplasmic protein
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain {ECO:0000313|EMBL:ABC27321.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospiril
BD02T64_scaffold_238_19
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23375..25183)
DNA (1809bp) protein (603aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA015-N04 RepID=UPI000368BDA7 rbh
Gamma-glutamyltransferase {ECO:0000313|EMBL:KJB97513.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella a
putative gamma-glutamyltranspeptidase
BD02T64_scaffold_238_20

Not on your lists

comp(25437..26312)
DNA (876bp) protein (292aa)
glutathione S-transferase n=1 Tax=Kiloniella laminariae RepID=UPI000369AB9C
Uncharacterized protein {ECO:0000313|EMBL:KKO10196.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
BD02T64_scaffold_238_21
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26446..27141)
DNA (696bp) protein (232aa)
Short chain dehydrogenase n=1 Tax=Grimontia sp. AK16 RepID=R1GS47_9GAMM rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:EZQ19202.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauz
short-chain dehydrogenase
BD02T64_scaffold_238_22
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27189..27782)
DNA (594bp) protein (198aa)
regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B40E28
recX; Regulatory protein recX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Mag
BD02T64_scaffold_238_23
unknown

Not on your lists

comp(27855..28544)
DNA (690bp) protein (230aa)

This feature has no annotations

BD02T64_scaffold_238_24
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28596..29549
DNA (954bp) protein (318aa)
mazG; nucleoside triphosphate pyrophosphohydrolase (EC:3.6.1.19)
nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Thalassospira lucentensis RepID=UPI0003B5C8BE
Nucleoside triphosphate pyrophosphohydrolase MazG {ECO:0000313|EMBL:KIL98848.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospiril
BD02T64_scaffold_238_25
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29546..30859)
DNA (1314bp) protein (438aa)
GTPase HflX n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NST5_9RHOB rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodoba
GTPase
BD02T64_scaffold_238_26
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30896..31135)
DNA (240bp) protein (80aa)
RNA chaperone Hfq n=1 Tax=Kiloniella laminariae RepID=UPI00035EE1E7
RNA chaperone Hfq
RNA-binding protein Hfq {ECO:0000255|HAMAP-Rule:MF_00436}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cr
BD02T64_scaffold_238_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31352..32203)
DNA (852bp) protein (284aa)
D-amino acid aminotransferase (EC:2.6.1.-)
Aminotransferase, class IV n=1 Tax=alpha proteobacterium BAL199 RepID=A8TUN3_9PROT rbh
Aminotransferase, class IV {ECO:0000313|EMBL:EDP63613.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
BD02T64_scaffold_238_28
Reinekea blandensis, Reinekea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32216..33703)
DNA (1488bp) protein (496aa)
Trk system potassium uptake protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BK85_9GAMM
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=314283 species="Bacteria; Proteobacteria; Gammaproteobacteria; Reinekea.;" source="Reinekea blandensis MED297.;"
TrkH family potassium uptake protein
BD02T64_scaffold_238_29
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33707..35083)
DNA (1377bp) protein (459aa)
K+ transport systems, NAD-binding component n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQ45_RHOCS rbh
Potassium transporter TrkA {ECO:0000313|EMBL:EWY42264.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella
trkA; potassium transporter peripheral membrane protein
BD02T64_scaffold_238_30
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35120..36526)
DNA (1407bp) protein (469aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXV1_PARL1
two component sigma-54 specific Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABS64734.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Pa
Displaying items 1-30 of 170 in total

View Taxonomy