ggKbase home page

BD02T64_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 903 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_4_1
unknown

Not on your lists

1..135
DNA (135bp) protein (45aa)

This feature has no annotations

BD02T64_scaffold_4_2
Polynucleobacter necessarius, Polynucleobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

828..5876
DNA (5049bp) protein (1683aa)
Outer membrane autotransporter barrel domain protein n=9 Tax=Polynucleobacter necessarius subsp. asymbioticus RepID=A4SXU7_POLSQ
outer membrane autotransporter
Outer membrane autotransporter barrel domain protein {ECO:0000313|EMBL:ABP34311.1}; TaxID=312153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Polynucleobac
BD02T64_scaffold_4_3
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5999..7708)
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4IV92_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ESQ14262.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source
sulfotransferase
BD02T64_scaffold_4_4
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8524..8733)
DNA (210bp) protein (70aa)
cold-shock protein n=1 Tax=Paracoccus sp. TRP RepID=UPI000225EF54 rbh
Cold-shock protein {ECO:0000313|EMBL:KEP70841.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
cold-shock DNA-binding domain-containing protein
BD02T64_scaffold_4_5
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8982..11231)
DNA (2250bp) protein (750aa)
DNA/RNA helicase, superfamily II n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N3X3_RHILT rbh
Putative cold shock protein, DEAD-box ATP-dependent RNA helicase
Putative cold shock protein, DEAD-box ATP-dependent RNA helicase {ECO:0000313|EMBL:CCQ73023.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillacea
BD02T64_scaffold_4_6
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11715..12314
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI00036E135C rbh
Acetyltransferase with multiple hexapeptide repeat domains {ECO:0000313|EMBL:GAK46156.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
acetyltransferase with multiple hexapeptide repeat domains
BD02T64_scaffold_4_7
Desulfovibrio salexigens, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12354..13496
DNA (1143bp) protein (381aa)
aminotransferase DegT n=1 Tax=Desulfovibrio longus RepID=UPI0003B36D1D rbh
DegT/DnrJ/EryC1/StrS aminotransferase
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:ACS81665.1}; TaxID=526222 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" sour
BD02T64_scaffold_4_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13549..14526)
DNA (978bp) protein (326aa)
2-nitropropane_dioxygenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGM1_PHEZH rbh
2-nitropropane dioxygenase NPD {ECO:0000313|EMBL:GAK45084.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
2-nitropropane dioxygenase
BD02T64_scaffold_4_9
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14757..15674
DNA (918bp) protein (306aa)
Transcriptional regulator, LysR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRB5_PARL1 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:GAK45083.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
LysR family transcriptional regulator
BD02T64_scaffold_4_10
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15781..16761
DNA (981bp) protein (327aa)
2-nitropropane dioxygenase NPD n=1 Tax=SAR86 cluster bacterium SAR86B RepID=J5KRM3_9GAMM rbh
Dioxygenases related to 2-nitropropane dioxygenase {ECO:0000313|EMBL:CDO60613.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidat
2-nitropropane dioxygenase
BD02T64_scaffold_4_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16861..18072
DNA (1212bp) protein (404aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRB1_PARL1 rbh
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:GAK45073.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
acyl-CoA dehydrogenase domain-containing protein
BD02T64_scaffold_4_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18152..18940)
DNA (789bp) protein (263aa)
Regulatory protein IclR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRC4_PARL1 rbh
DNA-binding transcriptional activator MhpR {ECO:0000313|EMBL:GAK45091.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
DNA-binding transcriptional activator MhpR
BD02T64_scaffold_4_13
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19072..19944
DNA (873bp) protein (291aa)
Taurine dioxygenase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRC8_PARL1 rbh
Taurine dioxygenase {ECO:0000313|EMBL:GAK45092.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
taurine dioxygenase
BD02T64_scaffold_4_14
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20073..20939
DNA (867bp) protein (289aa)
Alpha-ketoglutarate-dependent taurine dioxygenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFR2_PHEZH rbh
Taurine dioxygenase {ECO:0000313|EMBL:GAK45085.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
alpha-ketoglutarate-dependent taurine dioxygenase
BD02T64_scaffold_4_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20956..21873)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRC0_PARL1 rbh
Conserved protein {ECO:0000313|EMBL:GAK45086.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
BD02T64_scaffold_4_16
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21901..24000)
DNA (2100bp) protein (700aa)
Oligopeptidase B n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRD4_PARL1 rbh
Oligopeptidase B {ECO:0000313|EMBL:GAK45095.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
oligopeptidase B
BD02T64_scaffold_4_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24085..24537)
DNA (453bp) protein (151aa)
MaoC domain protein dehydratase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRD6_PARL1 rbh
dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ABS62469.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lava
BD02T64_scaffold_4_18
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24808..25545)
DNA (738bp) protein (246aa)
Putative glutathione S-transferase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZFQ3_9PROT
putative glutathione S-transferase
Putative glutathione S-transferase {ECO:0000313|EMBL:ADZ25883.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitro
BD02T64_scaffold_4_19
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25659..26360
DNA (702bp) protein (234aa)
Transcriptional regulator n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R9W7_9RHOB rbh
Transcriptional regulator {ECO:0000313|EMBL:EEA92047.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp
helix-turn-helix type 11 domain-containing protein
BD02T64_scaffold_4_20
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26370..26870)
DNA (501bp) protein (167aa)
OmpA/MotB domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRD7_PARL1 rbh
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:GAK45097.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
OmpA/MotB domain-containing protein
BD02T64_scaffold_4_21
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26979..27899)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AJD1_AZOBR rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCC97343.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum b
BD02T64_scaffold_4_22
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28030..29106
DNA (1077bp) protein (359aa)
Putative acetyl esterase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AJD0_AZOBR rbh
acetyl esterase
Acetyl esterase {ECO:0000313|EMBL:AIB13941.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
BD02T64_scaffold_4_23
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29109..30662)
DNA (1554bp) protein (518aa)
AMP-dependent synthetase and ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRD8_PARL1 rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:GAK45098.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
AMP-dependent synthetase and ligase
BD02T64_scaffold_4_24
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30999..31904
DNA (906bp) protein (302aa)
Enoyl-CoA hydratase [valine degradation] {ECO:0000313|EMBL:CDO60629.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CDO60629.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Pha
Enoyl-CoA hydratase/isomerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRD9_PARL1 rbh
enoyl-CoA hydratase
BD02T64_scaffold_4_25
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31987..32604)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036C6401 rbh
hypothetical protein Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
hypothetical protein
BD02T64_scaffold_4_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32792..34012)
DNA (1221bp) protein (407aa)
Major facilitator superfamily MFS_1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRE4_PARL1 rbh
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABS62477.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum
BD02T64_scaffold_4_27
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34317..35567
DNA (1251bp) protein (417aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI000369E211 rbh
Signal transduction histidine kinase
BD02T64_scaffold_4_28
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35580..36281)
DNA (702bp) protein (234aa)
Male sterility domain n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRE5_PARL1
Conserved protein {ECO:0000313|EMBL:GAK45103.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
BD02T64_scaffold_4_29
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36278..36544)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRF5_PARL1 rbh
Conserved protein {ECO:0000313|EMBL:GAK45105.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
BD02T64_scaffold_4_30
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36605..36916)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRF6_PARL1 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62489.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvib
Displaying items 1-30 of 903 in total

View Taxonomy