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BD02T64_scaffold_87

Search features with annotation key words

Displaying items 1-30 of 148 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_87_1
unknown

Not on your lists

comp(471..1016)
DNA (546bp) protein (182aa)

This feature has no annotations

BD02T64_scaffold_87_2
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1120..2619)
DNA (1500bp) protein (500aa)
Glutamate synthase family protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FJV9_9RHOB rbh
Glutamate synthase family protein {ECO:0000313|EMBL:EDM72677.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobac
ferredoxin-dependent glutamate synthase
BD02T64_scaffold_87_3
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2757..3242
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Ruegeria sp. R11 RepID=B7QSK5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KHQ50512.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. U
hypothetical protein
BD02T64_scaffold_87_4
Ruegeria sp. TM1040, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3667..6285)
DNA (2619bp) protein (873aa)
ATPase AAA-2 n=1 Tax=Ruegeria sp. (strain TM1040) RepID=Q1GKF3_RUEST rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=292414 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. (strain
ATPase AAA
BD02T64_scaffold_87_5
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6628..6933
DNA (306bp) protein (102aa)
Uncharacterized protein {ECO:0000313|EMBL:AJE45177.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter ind
BD02T64_scaffold_87_6
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7177..7890
DNA (714bp) protein (238aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LPN8_DINSH rbh
BD02T64_scaffold_87_7
Paracoccus sp. 5503, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8072..9064
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XQB9_PARAH rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ22599.1}; TaxID=1525717 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 550
hypothetical protein
BD02T64_scaffold_87_8
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9158..9562)
DNA (405bp) protein (135aa)
Nudix domain protein n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BEJ2_9RHOB rbh
DNA mismatch repair protein MutT {ECO:0000313|EMBL:KIC14182.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisinger
NUDIX domain protein
BD02T64_scaffold_87_9
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9817..11127
DNA (1311bp) protein (437aa)
dinB; DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=375451 species="Bacteria; Proteobacteria; Alp
DNA polymerase IV n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q16C83_ROSDO
BD02T64_scaffold_87_10
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11212..12075)
DNA (864bp) protein (288aa)
N-formylglutamate amidohydrolase, putative n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FJX8_9RHOB
N-formylglutamate amidohydrolase, putative {ECO:0000313|EMBL:EDM72696.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source=
N-formylglutamate amidohydrolase
BD02T64_scaffold_87_11
Roseobacter sp. MED193, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12401..12526
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=2 Tax=Roseobacter RepID=A3XDR5_9RHOB
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=314262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rose
rpmJ; 50S ribosomal protein L36
BD02T64_scaffold_87_12
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12825..14045)
DNA (1221bp) protein (407aa)
paaK2; phenylacetate-CoA ligase PaaK (EC:6.2.1.30)
Phenylacetate-CoA ligase, putative n=1 Tax=Roseovarius sp. TM1035 RepID=A6DV30_9RHOB rbh
Phenylacetate-CoA ligase, putative {ECO:0000313|EMBL:EDM33254.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseova
BD02T64_scaffold_87_13
Ruegeria sp. ANG-R, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14287..14544)
DNA (258bp) protein (86aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NTZ9_9RHOB
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIC40429.1}; TaxID=1577903 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ru
high-affinity branched-chain amino acid transporter ATP-binding protein
BD02T64_scaffold_87_14
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14845..15351
DNA (507bp) protein (169aa)
DNA-binding response regulator n=1 Tax=Roseovarius sp. 217 RepID=A3W0D5_9RHOB
DNA-binding response regulator {ECO:0000313|EMBL:EAQ25649.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius
chemotaxis protein CheY
BD02T64_scaffold_87_15
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15427..15657
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CZ38_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ENZ90186.1}; TaxID=1265309 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria mobilis F19
hypothetical protein
BD02T64_scaffold_87_16
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15654..16862)
DNA (1209bp) protein (403aa)
N-carbamoyl-L-amino acid amidohydrolase n=1 Tax=Roseovarius sp. 217 RepID=A3W0D8_9RHOB rbh
Allantoate amidohydrolase {ECO:0000313|EMBL:KJS45834.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp.
amidase, hydantoinase/carbamoylase family
BD02T64_scaffold_87_17
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16904..18136
DNA (1233bp) protein (411aa)
Lysine-ketoglutarate reductase n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LNA5_RUEPO
lkr; Lysine-ketoglutarate reductase
Lysine-ketoglutarate reductase {ECO:0000313|EMBL:AAV96534.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomer
BD02T64_scaffold_87_18
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18149..18472)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Oceanicola sp. S124 RepID=UPI00025590E0 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM49674.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22I
hypothetical protein
BD02T64_scaffold_87_19
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18565..19326)
DNA (762bp) protein (254aa)
Oxidoreductase, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q16CA0_ROSDO
oxidoreductase
Oxidoreductase, putative {ECO:0000313|EMBL:ABG30393.1}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter denit
BD02T64_scaffold_87_20
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19348..20115)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FLW2_9RHOB rbh
hypothetical protein
Tax=BJP_08E140C01_Roseovarius_63_250
BD02T64_scaffold_87_21
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20121..21353)
DNA (1233bp) protein (411aa)
Dehydrogenase, putative n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FLW1_9RHOB
Dehydrogenase, putative {ECO:0000313|EMBL:EDM73379.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. Az
flavin containing amine oxidoreductase-like protein
BD02T64_scaffold_87_22
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21759..22265
DNA (507bp) protein (169aa)
RNA polymerase sigma-70 factor n=1 Tax=Roseovarius sp. 217 RepID=A3W304_9RHOB rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:KGM87058.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" sour
rpoE; RNA polymerase sigma factor RpoE
BD02T64_scaffold_87_23
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22262..22924
DNA (663bp) protein (221aa)
Anti-sigma factor ChrR n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FLV9_9RHOB rbh
Anti-sigma factor ChrR {ECO:0000313|EMBL:EDM73377.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. Azw
chrR; transcriptional activator ChrR
BD02T64_scaffold_87_24
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23160..23990
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Vibrio genomosp. F10 RepID=UPI0003135206 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC94506.1}; TaxID=670 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus.;"
BD02T64_scaffold_87_25
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24243..25427)
DNA (1185bp) protein (395aa)
Transmembrane protein n=1 Tax=Rhodobacteraceae bacterium HTCC2083 RepID=B6AV15_9RHOB rbh
RmuC domain-containing protein
Tax=BJP_08E140C01_Roseovarius_63_250
BD02T64_scaffold_87_26
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25424..27331)
DNA (1908bp) protein (636aa)
DNA mismatch repair protein MutL n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BEX4_9RHOB
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodo
mutL; DNA mismatch repair protein
BD02T64_scaffold_87_27
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27429..28652)
DNA (1224bp) protein (408aa)
Class I monoheme cytochrome c n=1 Tax=Roseobacter sp. GAI101 RepID=B7RKQ3_9RHOB
Cysteine desulfurase {ECO:0000313|EMBL:KGM47149.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S
hypothetical protein
BD02T64_scaffold_87_28
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28756..29667
DNA (912bp) protein (304aa)
LysR family transcriptional regulator {ECO:0000313|EMBL:KDB05533.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="D
Transcriptional regulator, LysR family id=2615189 bin=GWF1_Rhodobacteraceae_65_7 species=Ruegeria lacuscaerulensis genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
LysR family transcriptional regulator
BD02T64_scaffold_87_29
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29871..31208)
DNA (1338bp) protein (446aa)
Ammonium transporter n=1 Tax=Citreicella sp. 357 RepID=I1AU67_9RHOB rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II
ammonium transporter rbh
BD02T64_scaffold_87_30
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31235..31573)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Oceanicola sp. S124 RepID=UPI0002557D84 rbh
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:KGM50347.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanic
Nitrogen regulatory protein P-II
Displaying items 1-30 of 148 in total

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