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BD02T64_scaffold_2017

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Displaying items 1-30 of 54 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_2017_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..188)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA536-G10 RepID=UPI00036E2AB9
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KIL05608.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (
BD02T64_scaffold_2017_2
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

501..1652
DNA (1152bp) protein (384aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRR6_TISMK
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:AFK55454.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrell
BD02T64_scaffold_2017_3
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1695..2393)
DNA (699bp) protein (233aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBas
Uracil-DNA glycosylase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS45_9GAMM
Uracil-DNA glycosylase
BD02T64_scaffold_2017_4
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2406..3890)
DNA (1485bp) protein (495aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
lysyl-tRNA synthetase n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255A75F
lysyl-tRNA synthetase
BD02T64_scaffold_2017_5
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3960..4802)
DNA (843bp) protein (281aa)
Peptide chain release factor 2 n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KH74_9GAMM
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
bacterial peptide chain release factor 2 (bRF-2)
BD02T64_scaffold_2017_6
Geomicrobium sp. JCM 19037, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5265..6026)
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4I0_POLGS rbh
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAK03750.1}; TaxID=1460634 species="Bacteria; Firmicutes; Bacilli; Bacillales; Geomicrobium.;" source="Geomicrobium sp. JCM 19037.;"
short-chain dehydrogenase
BD02T64_scaffold_2017_7
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6090..7406)
DNA (1317bp) protein (439aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobact
M18 family aminopeptidase n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCJ1_9GAMM
aminopeptidase
BD02T64_scaffold_2017_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7490..8374)
DNA (885bp) protein (295aa)
Putative oxidoreductase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X9Y6_RHIFR
3-hydroxyisobutyrate dehydrogenase
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:AHK44561.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.
BD02T64_scaffold_2017_9

Not on your lists

comp(8379..9185)
DNA (807bp) protein (269aa)
uppP; UDP pyrophosphate phosphatase (EC:3.6.1.27)
UDP pyrophosphate phosphatase n=1 Tax=Teredinibacter turnerae RepID=UPI000370B273 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL63455.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_2017_10
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9219..9941)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Edwardsiella tarda C07-087 RepID=M4TJP2_EDWTA
Uncharacterized protein {ECO:0000313|EMBL:KJS09755.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
hypothetical protein
BD02T64_scaffold_2017_11
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10139..11086)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DPM6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCU71371.1}; TaxID=1298593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans MIL-
BD02T64_scaffold_2017_12
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11331..12338)
DNA (1008bp) protein (336aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF
hemH; ferrochelatase (EC:4.99.1.1)
Ferrochelatase n=1 Tax=Oleispira antarctica RB-8 RepID=R4YSI8_OLEAN
BD02T64_scaffold_2017_13
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12436..13089)
DNA (654bp) protein (218aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase (EC:2.7.4.3)
adenylate kinase n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255A495
BD02T64_scaffold_2017_14
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13287..14108)
DNA (822bp) protein (274aa)
nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Teredinibacter turnerae RepID=UPI00036C68DA rbh
MazG family protein
MazG family protein {ECO:0000313|EMBL:ACR14705.1}; TaxID=377629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadales genera incertae sedis; Teredinibacter.;" source
BD02T64_scaffold_2017_15
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14098..16332)
DNA (2235bp) protein (745aa)
(P)ppGpp synthetase {ECO:0000313|EMBL:KJS09758.1}; EC=2.7.6.5 {ECO:0000313|EMBL:KJS09758.1};; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacter
GTP pyrophosphokinase (EC:2.7.6.5)
GTP pyrophosphokinase n=1 Tax=Cellvibrio sp. BR RepID=I3I7D5_9GAMM
BD02T64_scaffold_2017_16
Endozoicomonas numazuensis, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16373..17263)
DNA (891bp) protein (297aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1137799 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; E
cysteine synthase (EC:2.5.1.47)
Cysteine synthase B n=1 Tax=Pseudomonas sp. VLB120 RepID=U5VAT5_9PSED
BD02T64_scaffold_2017_17
Endozoicomonas elysicola, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17417..17800)
DNA (384bp) protein (128aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF
holo-acyl-carrier-protein synthase (EC:2.7.8.7)
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI0003762A6C
BD02T64_scaffold_2017_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17814..18560)
DNA (747bp) protein (249aa)
DNA repair protein RecO n=1 Tax=Pseudomonas sp. CBZ-4 RepID=UPI00034530C4
DNA recombination protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=294 species="Bacteria; Proteobacteria; Gammap
BD02T64_scaffold_2017_19
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18646..19548)
DNA (903bp) protein (301aa)
GTPase Era n=1 Tax=Pseudomonas mendocina RepID=UPI0003604288
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
era; GTP-binding protein Era
BD02T64_scaffold_2017_20
Halomonas meridiana, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19553..20191)
DNA (639bp) protein (213aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
rnc; ribonuclease III (EC:3.1.26.3)
ribonuclease III n=1 Tax=Halomonas lutea RepID=UPI0003748C75
BD02T64_scaffold_2017_21
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20216..20584)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS29_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJS09764.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
hypothetical protein
BD02T64_scaffold_2017_22
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20605..21393)
DNA (789bp) protein (263aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria b
signal peptidase I (EC:3.4.21.89)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI00037A97DF rbh
BD02T64_scaffold_2017_23
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21396..23213)
DNA (1818bp) protein (606aa)
Elongation factor 4 {ECO:0000255|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000255|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000255|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000255|HAMAP
elongation factor 4 n=1 Tax=Microbulbifer variabilis RepID=UPI000373EE29
lepA; GTP-binding protein LepA
BD02T64_scaffold_2017_24
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23322..24680)
DNA (1359bp) protein (453aa)
Serine protease MucD n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS33_9GAMM rbh
Serine peptidase {ECO:0000313|EMBL:KJS09766.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
serine protease HtrA/DegQ/DegS family
BD02T64_scaffold_2017_25
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24755..25189)
DNA (435bp) protein (145aa)
Positive regulator for alginate biosynthesis MucC n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PJ98_CELJU
mucC; positive regulator for alginate biosynthesis MucC
Positive regulator for alginate biosynthesis MucC {ECO:0000313|EMBL:ACE84498.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" s
BD02T64_scaffold_2017_26

Not on your lists

comp(25286..25981)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS36_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKL23246.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
mucA
BD02T64_scaffold_2017_27
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26201..26794)
DNA (594bp) protein (198aa)
Sigma-70 region 2 n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21IG8_SACD2 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS09769.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
sigma-70 region 2
BD02T64_scaffold_2017_28
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27007..28629
DNA (1623bp) protein (541aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria b
nadB; L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=1 Tax=Gilvimarinus chinensis RepID=UPI00037F0EC4
BD02T64_scaffold_2017_29
unknown

Not on your lists

comp(28652..29089)
DNA (438bp) protein (146aa)

This feature has no annotations

BD02T64_scaffold_2017_30
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29061..29309)
DNA (249bp) protein (83aa)
response regulator receiver n=1 Tax=Microbulbifer variabilis RepID=UPI000371DBA3
Response regulator receiver protein {ECO:0000313|EMBL:KJS09772.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
hypothetical protein
Displaying items 1-30 of 54 in total

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