ggKbase home page

BD02T64_scaffold_394

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_394_1
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1184)
DNA (1182bp) protein (394aa)
Putative pyridoxal-dependent decarboxylase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VN2_COLP3
pyridoxal-dependent decarboxylase
Putative pyridoxal-dependent decarboxylase {ECO:0000313|EMBL:AAZ24236.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colw
BD02T64_scaffold_394_2
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1357..2106)
DNA (750bp) protein (250aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000313|EMBL:KGJ91278.1}; EC=2.3.1.117 {ECO:0000313|EMBL:KGJ91278.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaprote
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117)
Acetyltransferase, CysE/LacA/LpxA/NodL family n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VN1_COLP3
BD02T64_scaffold_394_3
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2103..3107)
DNA (1005bp) protein (335aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:M
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Pseudoalteromonas haloplanktis (strain TAC 125) RepID=Q3IJ34_PSEHT
BD02T64_scaffold_394_4
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3791..4837
DNA (1047bp) protein (349aa)
rsmC; ribosomal RNA small subunit methyltransferase C (EC:2.1.1.52)
Ribosomal RNA small subunit methyltransferase C {ECO:0000256|HAMAP-Rule:MF_01862, ECO:0000256|SAAS:SAAS00048249}; EC=2.1.1.172 {ECO:0000256|HAMAP-Rule:MF_01862, ECO:0000256|SAAS:SAAS00048248};; 16S rR
Ribosomal RNA small subunit methyltransferase C n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=RSMC_COLP3
BD02T64_scaffold_394_5
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4882..6513
DNA (1632bp) protein (544aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colw
Sensory box sensor histidine kinase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VM9_COLP3
sensory box sensor histidine kinase
BD02T64_scaffold_394_6
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6728..7435
DNA (708bp) protein (236aa)
Aerobic respiration control protein ArcA n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VM8_COLP3
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:KGJ91281.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwelli
arcA; two-component response regulator
BD02T64_scaffold_394_7
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7477..7833)
DNA (357bp) protein (119aa)
Histidine-containing phosphotransfer (HPt) domain protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VM7_COLP3
Uncharacterized protein {ECO:0000313|EMBL:KJE45250.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas virid
histidine-containing phosphotransfer domain-containing protein
BD02T64_scaffold_394_8
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8049..8972
DNA (924bp) protein (308aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwell
GTP cyclohydrolase n=1 Tax=Colwellia piezophila RepID=UPI00037E32C3
GTP cyclohydrolase
BD02T64_scaffold_394_9
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9488..10015
DNA (528bp) protein (176aa)
gltB; glutamate synthase subunit alpha (EC:1.4.1.13)
Glutamate synthase (Ferredoxin) {ECO:0000313|EMBL:KGJ91284.1}; EC=1.4.7.1 {ECO:0000313|EMBL:KGJ91284.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwellia
glutamate synthase subunit alpha n=1 Tax=Colwellia piezophila RepID=UPI00035D41DF
BD02T64_scaffold_394_10
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10015..13152
DNA (3138bp) protein (1046aa)
Glutamate synthase (Ferredoxin) {ECO:0000313|EMBL:KGJ91284.1}; EC=1.4.7.1 {ECO:0000313|EMBL:KGJ91284.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwellia
gltB; glutamate synthase subunit alpha (EC:1.4.1.13)
glutamate synthase subunit alpha n=1 Tax=Colwellia piezophila RepID=UPI00035D41DF
BD02T64_scaffold_394_11
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13115..13861
DNA (747bp) protein (249aa)
Glutamate synthase {ECO:0000313|EMBL:KJE40013.1}; EC=1.4.1.13 {ECO:0000313|EMBL:KJE40013.1};; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thala
gltB; glutamate synthase subunit alpha (EC:1.4.1.13)
Glutamate synthase, large subunit n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VM3_COLP3
BD02T64_scaffold_394_12
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13872..14582
DNA (711bp) protein (237aa)
Glutamate synthase, small subunit {ECO:0000313|EMBL:KGJ91285.1}; EC=1.4.1.13 {ECO:0000313|EMBL:KGJ91285.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwel
gltD; glutamate synthase subunit beta (EC:1.4.1.13)
glutamate synthase subunit beta n=1 Tax=Colwellia piezophila RepID=UPI000360295B
BD02T64_scaffold_394_13
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14603..15292
DNA (690bp) protein (230aa)
gltD; glutamate synthase subunit beta (EC:1.4.1.13)
glutamate synthase subunit beta n=1 Tax=Colwellia piezophila RepID=UPI000360295B
Glutamate synthase {ECO:0000313|EMBL:KJE40012.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actiniarum
BD02T64_scaffold_394_14
Glaciecola punicea, Glaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15474..18728)
DNA (3255bp) protein (1085aa)
Snf2 family protein n=1 Tax=Glaciecola punicea DSM 14233 = ACAM 611 RepID=H5TBQ1_9ALTE
Snf2 family protein {ECO:0000313|EMBL:GAB55728.1}; TaxID=1121923 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Glaciecola.;" source="Glaciecola punicea DSM
Snf2 family protein
BD02T64_scaffold_394_15
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18820..20370)
DNA (1551bp) protein (517aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00036071A8
Na+/H+ antiporter NhaC-like protein {ECO:0000313|EMBL:KGJ95901.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia ps
Na+/H+ antiporter NhaC
BD02T64_scaffold_394_16
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20360..20896)
DNA (537bp) protein (179aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae
folA; dihydrofolate reductase (EC:1.5.1.3)
diacylglycerol kinase n=1 Tax=Colwellia piezophila RepID=UPI00036CDF2C
BD02T64_scaffold_394_17
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21059..23230)
DNA (2172bp) protein (724aa)
Ferrous iron transport protein B n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q488W6_COLP3
Ferrous iron transport protein B {ECO:0000313|EMBL:KGJ94984.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psych
feoB; ferrous iron transport protein B
BD02T64_scaffold_394_18
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23261..23521)
DNA (261bp) protein (87aa)
Ferrous iron transport protein A n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q488W7_COLP3
FeoA family protein {ECO:0000313|EMBL:KGJ94985.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (V
feoA; ferrous iron transport protein A
BD02T64_scaffold_394_19
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23752..26055)
DNA (2304bp) protein (768aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=167879 species="Bac
parC; DNA topoisomerase IV subunit A (EC:5.99.1.-)
DNA topoisomerase 4 subunit A n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WK0_COLP3
BD02T64_scaffold_394_20
unknown

Not on your lists

comp(26142..26666)
DNA (525bp) protein (175aa)

This feature has no annotations

BD02T64_scaffold_394_21
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26626..27915)
DNA (1290bp) protein (430aa)
GGDEF domain protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WJ9_COLP3
Uncharacterized protein {ECO:0000313|EMBL:KJE47809.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas virid
GGDEF domain-containing protein
BD02T64_scaffold_394_22
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27915..29801)
DNA (1887bp) protein (629aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WJ8_COLP3
Diguanylate cyclase and serine/threonine protein kinase with TPR repeat {ECO:0000313|EMBL:KGJ89038.1}; Flags: Precursor;; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromona
diguanylate cyclase
BD02T64_scaffold_394_23
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29919..31163)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI0003629FAA
MFS transporter permease {ECO:0000313|EMBL:KJE41757.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas acti
major facilitator transporter
BD02T64_scaffold_394_24
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31675..32721)
DNA (1047bp) protein (349aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadal
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI0003612D8C
BD02T64_scaffold_394_25
Vibrio sinaloensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33155..33814)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Vibrio sinaloensis DSM 21326 RepID=E8M426_9VIBR rbh
Uncharacterized protein {ECO:0000313|EMBL:EGA71209.1}; TaxID=945550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sinaloensis DSM 21326.;"
hypothetical protein
BD02T64_scaffold_394_26
Photobacterium iliopiscarium, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33815..35455)
DNA (1641bp) protein (547aa)
RecF/RecN/SMC family protein n=1 Tax=Vibrio sinaloensis DSM 21326 RepID=E8M427_9VIBR rbh
Uncharacterized protein {ECO:0000313|EMBL:KJG19446.1}; TaxID=56192 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium iliopisca
RecF/RecN/SMC family protein
BD02T64_scaffold_394_27
Vibrio sinaloensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35448..36434)
DNA (987bp) protein (329aa)
Putative RNA-dependent DNA polymerase n=1 Tax=Vibrio sinaloensis DSM 21326 RepID=E8M428_9VIBR rbh
Putative RNA-dependent DNA polymerase {ECO:0000313|EMBL:EGA71211.1}; TaxID=945550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sinaloensi
DNA polymerase
BD02T64_scaffold_394_28
unknown

Not on your lists

comp(36722..37570)
DNA (849bp) protein (283aa)

This feature has no annotations

BD02T64_scaffold_394_29
unknown

Not on your lists

comp(37607..38242)
DNA (636bp) protein (212aa)

This feature has no annotations

BD02T64_scaffold_394_30
unknown

Not on your lists

comp(38298..38594)
DNA (297bp) protein (99aa)

This feature has no annotations

Displaying items 1-30 of 77 in total

View Taxonomy