ggKbase home page

BD02T64_scaffold_666

Search features with annotation key words

Displaying items 1-30 of 52 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_666_1
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1577)
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000368A311
thiamine monophosphate synthase Tax=RBG_13_Deltaproteobacteria_47_9_curated
TonB-dependent receptor, plug
BD02T64_scaffold_666_2
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1749..2540
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000372203C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ26730.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
BD02T64_scaffold_666_3
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2607..4544
DNA (1938bp) protein (646aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=28229 species="Bacteria; Proteobact
topB; DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47UU1_COLP3
BD02T64_scaffold_666_4
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4629..5105
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000372A3F1
Ion transport 2 domain protein {ECO:0000313|EMBL:KGJ92286.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychre
voltage-gated potassium channel
BD02T64_scaffold_666_5
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5184..6188)
DNA (1005bp) protein (335aa)
UPF0176 protein CPS_4798 n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Y4798_COLP3
UPF0176 protein ND2E_1721 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrer
hypothetical protein
BD02T64_scaffold_666_6
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6308..7747)
DNA (1440bp) protein (480aa)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2)
UPI0003D00C23 related cluster n=1 Tax=unknown RepID=UPI0003D00C23 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ31303.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
BD02T64_scaffold_666_7
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8406..11168
DNA (2763bp) protein (921aa)
Aconitate hydratase {ECO:0000313|EMBL:KGJ94534.1}; EC=4.2.1.3 {ECO:0000313|EMBL:KGJ94534.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwel
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (EC:4.2.1.3)
Putative aconitate hydratase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47UT1_COLP3
BD02T64_scaffold_666_8
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11319..11681)
DNA (363bp) protein (121aa)
Putative lipoprotein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47UT0_COLP3
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AAZ27553.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea
BD02T64_scaffold_666_9
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11768..14494)
DNA (2727bp) protein (909aa)
aminopeptidase N (EC:3.4.11.2)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI0003723AA8
Aminopeptidase N {ECO:0000313|EMBL:KJE39470.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actiniarum.;
BD02T64_scaffold_666_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14733..15356
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B755AA rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO40133.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
BD02T64_scaffold_666_11
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15634..16350
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48A55_COLP3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ28029.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
BD02T64_scaffold_666_12
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16442..17206)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Glaciecola arctica BSs20135 RepID=K6YYB1_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:KJE40985.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actin
hypothetical protein
BD02T64_scaffold_666_13
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17374..18804)
DNA (1431bp) protein (477aa)
lpdA; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelli
Dihydrolipoyl dehydrogenase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47US8_COLP3
BD02T64_scaffold_666_14
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18916..20595)
DNA (1680bp) protein (560aa)
aceF; dihydrolipoamide acetyltransferase (EC:2.3.1.12)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteo
Pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47US7_COLP3
BD02T64_scaffold_666_15
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20622..23315)
DNA (2694bp) protein (898aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
aceE; pyruvate dehydrogenase subunit E1 (EC:1.2.4.1)
pyruvate dehydrogenase n=1 Tax=Colwellia piezophila RepID=UPI00037EB125
BD02T64_scaffold_666_16
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23425..24183)
DNA (759bp) protein (253aa)
transcriptional regulator n=1 Tax=Colwellia piezophila RepID=UPI00036353FA
pdhR; transcriptional regulator PdhR
Pyruvate dehydrogenase complex repressor {ECO:0000313|EMBL:AAZ27384.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwel
BD02T64_scaffold_666_17
unknown

Not on your lists

comp(24137..24304)
DNA (168bp) protein (56aa)

This feature has no annotations

BD02T64_scaffold_666_18
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24770..25750)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00036C0947
Signaling modulator of AmpD, AmpE {ECO:0000313|EMBL:KGJ92248.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psyc
regulatory protein AmpE
BD02T64_scaffold_666_19
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25919..26581)
DNA (663bp) protein (221aa)
ampD; N-acetyl-anhydromuranmyl-L-alanine amidase (EC:3.5.1.28)
N-acetyl-anhydromuramyl-L-alanine amidase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47US2_COLP3
N-acetyl-anhydromuranmyl-L-alanine amidase {ECO:0000313|EMBL:KJE48181.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="
BD02T64_scaffold_666_20
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26588..27109
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000381B09E
Uncharacterized protein {ECO:0000313|EMBL:KGJ92246.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
hypothetical protein
BD02T64_scaffold_666_21
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27122..28051
DNA (930bp) protein (310aa)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:KGJ92245.1}; EC=2.4.2.19 {ECO:0000313|EMBL:KGJ92245.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
nadC; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Colwellia piezophila RepID=UPI0003721FD9
BD02T64_scaffold_666_22
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28070..28492
DNA (423bp) protein (141aa)
Acetyltransferase, GNAT family n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47UJ9_COLP3
acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:AAZ26626.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychr
BD02T64_scaffold_666_23
Shewanella frigidimarina, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28597..29067)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Shewanella frigidimarina (strain NCIMB 400) RepID=Q080C6_SHEFN rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI72389.1}; TaxID=318167 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella frigidimar
BD02T64_scaffold_666_24
Shewanella frigidimarina, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29067..30314)
DNA (1248bp) protein (416aa)
PepSY-associated TM helix domain protein n=1 Tax=Shewanella frigidimarina (strain NCIMB 400) RepID=Q080C5_SHEFN
PepSY-associated TM helix domain-containing protein
PepSY-associated TM helix domain protein {ECO:0000313|EMBL:ABI72390.1}; Flags: Precursor;; TaxID=318167 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewane
BD02T64_scaffold_666_25
unknown

Not on your lists

30358..30468
DNA (111bp) protein (37aa)

This feature has no annotations

BD02T64_scaffold_666_26
Pseudoalteromonas flavipulchra, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30536..32647
DNA (2112bp) protein (704aa)
Outer membrane receptor for ferric-pyochelin FptA n=1 Tax=Pseudoalteromonas haloplanktis ANT/505 RepID=F3BH20_PSEHA rbh
Ligand-gated channel protein {ECO:0000313|EMBL:KHM44579.1}; TaxID=1315273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="
TonB-dependent siderophore receptor
BD02T64_scaffold_666_27
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32922..33494)
DNA (573bp) protein (191aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
msrA2; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47UR6_COLP3
BD02T64_scaffold_666_28
Bacteriovorax sp. DB6_IX, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33998..34573)
DNA (576bp) protein (192aa)
Transcriptional regulator, TetR family n=1 Tax=Bacteriovorax sp. DB6_IX RepID=T0RKW0_9DELT rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EQC50689.1}; TaxID=1353530 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax.;" sour
transcriptional regulator
BD02T64_scaffold_666_29
Leptospira sp. B5-022, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(34631..35704)
DNA (1074bp) protein (358aa)
3-beta hydroxysteroid dehydrogenase/isomerase family protein n=1 Tax=Leptospira sp. B5-022 RepID=M6DL31_9LEPT rbh
3-beta hydroxysteroid dehydrogenase/isomerase family protein {ECO:0000313|EMBL:EMJ99225.1}; TaxID=1242992 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospi
NAD-dependent epimerase/dehydratase
BD02T64_scaffold_666_30
Shewanella piezotolerans, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36002..36136
DNA (135bp) protein (45aa)
Transposase, putative {ECO:0000313|EMBL:ACJ27828.1}; TaxID=225849 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella piezotoleran
Displaying items 1-30 of 52 in total

View Taxonomy