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BD02T64_scaffold_687

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_687_1
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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577..1140
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI0003809806
transferase hexapeptide domain-containing protein
Bacterial transferase hexapeptide domain protein {ECO:0000313|EMBL:AAZ28704.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source
BD02T64_scaffold_687_2
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1144..1377)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI0003779EB6
Uncharacterized protein {ECO:0000313|EMBL:KGJ96717.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
hypothetical protein
BD02T64_scaffold_687_3
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1381..2199)
DNA (819bp) protein (273aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00036C069A
BD02T64_scaffold_687_4
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2360..3064)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000380D288
OmpW family protein {ECO:0000313|EMBL:KGJ94773.1}; Flags: Precursor;; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia
OmpW family outer membrane protein
BD02T64_scaffold_687_5
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3287..3850)
DNA (564bp) protein (188aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852,
tRNA threonylcarbamoyladenosine biosynthesis protein RimN n=1 Tax=Colwellia piezophila RepID=UPI00037B0FA5
RNA-binding protein
BD02T64_scaffold_687_6
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3862..4365)
DNA (504bp) protein (168aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) RepID=E1SV89_FERBD rbh
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
BD02T64_scaffold_687_7
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4420..5001)
DNA (582bp) protein (194aa)
Topoisomerase DNA-binding C4 zinc finger domain protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48AU4_COLP3
DNA topoisomerase type IA zn finger domain protein {ECO:0000313|EMBL:KGJ96722.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" sourc
topoisomerase DNA-binding C4 zinc finger domain-containing protein
BD02T64_scaffold_687_8
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5084..5542)
DNA (459bp) protein (153aa)
Protein Smg homolog n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=SMG_COLP3
smg; smg protein
Protein Smg homolog {ECO:0000256|HAMAP-Rule:MF_00598}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
BD02T64_scaffold_687_9
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5586..6722)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00037E435D
DNA protecting protein DprA {ECO:0000313|EMBL:KGJ96724.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychreryt
DNA processing protein DprA
BD02T64_scaffold_687_10
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6770..7903)
DNA (1134bp) protein (378aa)
LysM domain protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48AU7_COLP3
Peptidoglycan-binding lysin domain-containing protein {ECO:0000313|EMBL:KGJ94766.1}; Flags: Precursor;; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliace
LysM domain-containing protein
BD02T64_scaffold_687_11
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8001..8516
DNA (516bp) protein (172aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
def1; polypeptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48AS8_COLP3
BD02T64_scaffold_687_12
Francisella tularensis, Francisella, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8540..9511
DNA (972bp) protein (324aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=264 species="Bact
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
methionyl-tRNA formyltransferase n=1 Tax=Colwellia piezophila RepID=UPI00036D21B8
BD02T64_scaffold_687_13
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9526..10869
DNA (1344bp) protein (448aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Altero
sun; sun protein (EC:2.1.1.-)
Sun protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48AT0_COLP3
BD02T64_scaffold_687_14
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10910..12286
DNA (1377bp) protein (459aa)
Trk system potassium uptake protein TrkA n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48AT1_COLP3
trkA; potassium transporter peripheral membrane component
Trk system potassium uptake protein TrkA {ECO:0000313|EMBL:AAZ26043.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwel
BD02T64_scaffold_687_15
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12304..13755)
DNA (1452bp) protein (484aa)
potassium transporter n=1 Tax=Colwellia piezophila RepID=UPI00036F215C
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia
trkH; Trk system potassium uptake protein TrkH
BD02T64_scaffold_687_16
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13781..14398)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000380697E
Uncharacterized protein {ECO:0000313|EMBL:KGJ96732.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
hypothetical protein
BD02T64_scaffold_687_17
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14410..15741)
DNA (1332bp) protein (444aa)
pepQ; proline dipeptidase (EC:3.4.13.9)
Xaa-Pro dipeptidase {ECO:0000255|HAMAP-Rule:MF_01279}; Short=X-Pro dipeptidase {ECO:0000255|HAMAP-Rule:MF_01279};; EC=3.4.13.9 {ECO:0000255|HAMAP-Rule:MF_01279};; Imidodipeptidase {ECO:0000255|HAMAP-R
Xaa-Pro dipeptidase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=PEPQ_COLP3
BD02T64_scaffold_687_18
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15873..17807)
DNA (1935bp) protein (645aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000381FF01
Lytic transglycosylase catalytic {ECO:0000313|EMBL:KGJ96734.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psych
soluble lytic murein transglycosylase
BD02T64_scaffold_687_19
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17963..18208
DNA (246bp) protein (82aa)
Sulfurtransferase TusA homolog {ECO:0000255|HAMAP-Rule:MF_00413}; EC=2.8.1.- {ECO:0000255|HAMAP-Rule:MF_00413};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; C
sulfurtransferase n=1 Tax=Colwellia piezophila RepID=UPI00036F9532
sirA; sirA protein
BD02T64_scaffold_687_20
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18409..19068
DNA (660bp) protein (220aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; Flags: Precursor;; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadale
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Shewanella woodyi (strain ATCC 51908 / MS32) RepID=B1KP90_SHEWM
BD02T64_scaffold_687_21
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19151..21217)
DNA (2067bp) protein (689aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetas
glyS; glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=SYGB_COLP3
BD02T64_scaffold_687_22
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21217..22137)
DNA (921bp) protein (307aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA syntheta
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
glycyl-tRNA synthetase n=1 Tax=Colwellia piezophila RepID=UPI00036BDAAD
BD02T64_scaffold_687_23
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22236..24680)
DNA (2445bp) protein (815aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=28229 species="Bacteria; Pro
gyrB; DNA gyrase, B subunit (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48AS4_COLP3
BD02T64_scaffold_687_24
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24715..25881)
DNA (1167bp) protein (389aa)
DNA repair protein RecF n=1 Tax=Colwellia piezophila RepID=UPI00036D3B3C
recF; DNA replication and repair protein RecF
DNA replication and repair protein RecF {ECO:0000255|HAMAP-Rule:MF_00365}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Col
BD02T64_scaffold_687_25
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25908..27011)
DNA (1104bp) protein (368aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=28229 species="Bacteri
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q48AS6_COLP3
BD02T64_scaffold_687_26
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27076..28374)
DNA (1299bp) protein (433aa)
chromosomal replication initiation protein n=1 Tax=Colwellia piezophila RepID=UPI00035FD87A
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Co
dnaA; chromosomal replication initiator protein DnaA
BD02T64_scaffold_687_27
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28955..29140
DNA (186bp) protein (62aa)
50S ribosomal protein L34 n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=RL34_COLP3
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwelli
rpmH; 50S ribosomal protein L34
BD02T64_scaffold_687_28
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29177..29560
DNA (384bp) protein (128aa)
rnpA; ribonuclease P protein component (EC:3.1.26.5)
ribonuclease P n=1 Tax=Colwellia piezophila RepID=UPI00037D3C63
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rul
BD02T64_scaffold_687_29
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29527..29775
DNA (249bp) protein (83aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=YIDD_COLP3
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000255|HAMAP-Rule:MF_00386}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.
BD02T64_scaffold_687_30
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29908..31542
DNA (1635bp) protein (545aa)
Membrane protein insertase YidC n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47U35_COLP3
inner membrane protein, 60 kDa
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_018
Displaying items 1-30 of 44 in total

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