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BD02T64_scaffold_1133

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1133_1
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..118)
DNA (117bp) protein (39aa)
50S ribosomal protein L21 n=1 Tax=Colwellia piezophila RepID=UPI00036F40DD
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000255|HAMAP-Rule:MF_01363}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychre
BD02T64_scaffold_1133_2
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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372..1370
DNA (999bp) protein (333aa)
Trans-hexaprenyltranstransferase {ECO:0000313|EMBL:KGJ94251.1}; EC=2.5.1.30 {ECO:0000313|EMBL:KGJ94251.1};; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwell
ispB; octaprenyl-diphosphate synthase (EC:2.5.1.-)
Octaprenyl-diphosphate synthase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VL1_COLP3
BD02T64_scaffold_1133_3
Tolumonas auensis, Tolumonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1400..1804
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Tolumonas auensis (strain DSM 9187 / TA4) RepID=C4LAW5_TOLAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACQ92319.1}; TaxID=595494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Tolumonas.;" source="Tolumonas auensis (strai
BD02T64_scaffold_1133_4
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1987..2922)
DNA (936bp) protein (312aa)
mdh; malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01516}; EC=1.1.1.37 {ECO:0000255|HAMAP-Rule:MF_01516};; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliac
Malate dehydrogenase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=MDH_COLP3
BD02T64_scaffold_1133_5
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3176..3649
DNA (474bp) protein (158aa)
Arginine repressor n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=ARGR_COLP3
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea
argR; arginine repressor ArgR
BD02T64_scaffold_1133_6
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3651..7004)
DNA (3354bp) protein (1118aa)
Sensory box sensor histidine kinase/response regulator n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VK8_COLP3
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:KGJ92315.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia p
sensory box sensor histidine kinase/response regulator
BD02T64_scaffold_1133_7
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7086..8495)
DNA (1410bp) protein (470aa)
ATPase n=1 Tax=Colwellia piezophila RepID=UPI00036B4E91
PhoH family protein {ECO:0000313|EMBL:KGJ92316.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (V
PhoH family protein
BD02T64_scaffold_1133_8
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8654..9967)
DNA (1314bp) protein (438aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Th
Sensor histidine kinase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q483B9_COLP3
sensor histidine kinase
BD02T64_scaffold_1133_9
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9989..11395)
DNA (1407bp) protein (469aa)
Transcriptional regulatory protein zraR n=1 Tax=Glaciecola arctica BSs20135 RepID=K6XGG8_9ALTE
Response regulator receiver protein {ECO:0000313|EMBL:KGJ88035.1}; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassotalea.;" source="Thalas
Fis family two component sigma-54-specific transcriptional regulator
BD02T64_scaffold_1133_10
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11465..13888)
DNA (2424bp) protein (808aa)
Permease n=1 Tax=Rahnella aquatilis HX2 RepID=H8P0J9_RAHAQ rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ88036.1}; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassotalea.;" source="Thalassotalea sp.
permease rbh
BD02T64_scaffold_1133_11
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13902..14621)
DNA (720bp) protein (240aa)
Phosphonate-transporting ATPase {ECO:0000313|EMBL:KGJ88037.1}; EC=3.6.3.28 {ECO:0000313|EMBL:KGJ88037.1};; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwel
ABC transporter n=1 Tax=Colwellia piezophila RepID=UPI00036BD189
ABC transporter ATP-binding protein
BD02T64_scaffold_1133_12
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14660..15913)
DNA (1254bp) protein (418aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q483C3_COLP3
Uncharacterized protein {ECO:0000313|EMBL:KGJ88038.1}; Flags: Precursor;; TaxID=1535422 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassotalea.;" source=
RND family efflux transporter MFP subunit
BD02T64_scaffold_1133_13
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16190..16960
DNA (771bp) protein (257aa)
Putative lipoprotein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47XG8_COLP3
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AAZ25397.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea
BD02T64_scaffold_1133_14
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17106..20018
DNA (2913bp) protein (971aa)
RNA polymerase-associated protein RapA {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010031}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010033};; ATP-dependent hel
RNA polymerase-associated protein RapA n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VK5_COLP3
hepA; ATP-dependent helicase HepA
BD02T64_scaffold_1133_15
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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20156..20803
DNA (648bp) protein (216aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliacea
ribosomal large subunit pseudouridine synthase A n=1 Tax=Colwellia piezophila RepID=UPI000371F14B
rluA; ribosomal large subunit pseudouridine synthase A
BD02T64_scaffold_1133_16
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20860..21807
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000378A329
Uncharacterized protein {ECO:0000313|EMBL:KGJ92319.1}; Flags: Precursor;; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwe
hypothetical protein
BD02T64_scaffold_1133_17
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22140..22964)
DNA (825bp) protein (275aa)
DnaJ-like protein DjlA n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VK2_COLP3
djlA; Dna-J like membrane chaperone protein
DnaJ-like protein DjlA {ECO:0000313|EMBL:AAZ27548.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythrae
BD02T64_scaffold_1133_18
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23074..25392
DNA (2319bp) protein (773aa)
LPS-assembly protein LptD n=1 Tax=Colwellia piezophila RepID=UPI0003643E32
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colw
imp; organic solvent tolerance protein
BD02T64_scaffold_1133_19
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25418..26716
DNA (1299bp) protein (433aa)
surA; peptidyl-prolyl cis-trans isomerase SurA (EC:5.2.1.8)
Chaperone SurA {ECO:0000255|HAMAP-Rule:MF_01183}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000255|HAMAP-Rule:MF_01183}; Short=PPIase SurA {ECO:0000255|HAMAP-Rule:MF_01183};; EC=5.2.1.8 {ECO:0000
Chaperone SurA n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=SURA_COLP3
BD02T64_scaffold_1133_20
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26719..27702
DNA (984bp) protein (328aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosph
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=PDXA_COLP3
pdxA; pyridoxal phosphate biosynthetic protein PdxA
BD02T64_scaffold_1133_21
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


27738..28619
DNA (882bp) protein (294aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=RSMA_COLP3
BD02T64_scaffold_1133_22
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28624..29454
DNA (831bp) protein (277aa)
apaH; diadenosine tetraphosphatase (EC:3.6.1.41)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000255|HAMAP-Rule:MF_00199}; EC=3.6.1.41 {ECO:0000255|HAMAP-Rule:MF_00199};; Ap4A hydrolase {ECO:0000255|HAMAP-Rule:MF_00199}; Diadenosine 5',5'''
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=APAH_COLP3
BD02T64_scaffold_1133_23
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29745..31763
DNA (2019bp) protein (673aa)
Methyl-accepting chemotaxis protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47VJ6_COLP3
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:KGJ92326.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="C
methyl-accepting chemotaxis protein
BD02T64_scaffold_1133_24

Not on your lists

comp(31851..33302)
DNA (1452bp) protein (484aa)
Protein-tyrosine sulfotransferase n=1 Tax=Pseudoalteromonas arctica A 37-1-2 RepID=U1K5J1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM07787.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative protein-tyrosine sulfotransferase
Displaying 24 items

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