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BD02T64_scaffold_1200

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Displaying items 1-30 of 45 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1200_1
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..294
DNA (294bp) protein (98aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WB9_COLP3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ26824.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
BD02T64_scaffold_1200_2
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

313..1431
DNA (1119bp) protein (373aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS0
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Colwellia piezophila RepID=UPI00037ECE69
BD02T64_scaffold_1200_3
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1557..2801
DNA (1245bp) protein (415aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=SYH_COLP3
BD02T64_scaffold_1200_4
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2811..3449
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00036BCDF4
Uncharacterized protein {ECO:0000313|EMBL:KJE44956.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas virid
hypothetical protein
BD02T64_scaffold_1200_5
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3534..4676
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI00037CA03B
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; T
outer membrane protein assembly complex subunit YfgL
BD02T64_scaffold_1200_6
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4795..6261
DNA (1467bp) protein (489aa)
GTPase Der n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=DER_COLP3
engA; GTP-binding protein EngA
GTPase Der {ECO:0000255|HAMAP-Rule:MF_00195}; GTP-binding protein EngA {ECO:0000255|HAMAP-Rule:MF_00195}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelli
BD02T64_scaffold_1200_7
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6456..7139
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WC6_COLP3
Uncharacterized protein {ECO:0000313|EMBL:KJE42232.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actin
hypothetical protein
BD02T64_scaffold_1200_8
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7194..8537)
DNA (1344bp) protein (448aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclea
Exodeoxyribonuclease 7 large subunit n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WC8_COLP3
BD02T64_scaffold_1200_9
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8718..10190
DNA (1473bp) protein (491aa)
guaB; inosine 5'-monophosphate dehydrogenase (EC:1.1.1.205)
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Colwellia piezophila RepID=UPI0003719F9E
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
BD02T64_scaffold_1200_10
unknown

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comp(10065..10319)
DNA (255bp) protein (85aa)

This feature has no annotations

BD02T64_scaffold_1200_11
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10372..11949
DNA (1578bp) protein (526aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase n=1 Tax=Colwellia piezophila RepID=UPI0003788852
BD02T64_scaffold_1200_12
Aliivibrio fischeri, Aliivibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12170..12520
DNA (351bp) protein (117aa)
Translation initiation inhibitor n=2 Tax=Aliivibrio fischeri RepID=B5ES91_VIBFM rbh
translation initiation inhibitor
Translation initiation inhibitor {ECO:0000313|EMBL:ACH64439.1}; TaxID=388396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio.;" source="Vibrio fischeri (s
BD02T64_scaffold_1200_13
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12629..13330
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WD3_COLP3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ28662.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythra
BD02T64_scaffold_1200_14
Vibrio fortis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13607..14275)
DNA (669bp) protein (223aa)
Pirin-related protein n=1 Tax=Vibrio sinaloensis DSM 21326 RepID=E8M6D5_9VIBR
Pilus assembly protein {ECO:0000313|EMBL:KDN29880.1}; TaxID=212667 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio fortis.;"
pilus assembly protein
BD02T64_scaffold_1200_15
Shewanella piezotolerans, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14431..15291
DNA (861bp) protein (287aa)
Transcriptional regulator, LysR family n=1 Tax=Shewanella piezotolerans (strain WP3 / JCM 13877) RepID=B8CRL7_SHEPW
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACJ30025.1}; TaxID=225849 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewan
BD02T64_scaffold_1200_16
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15322..17259
DNA (1938bp) protein (646aa)
hypothetical protein n=1 Tax=Amphritea japonica RepID=UPI0003755548
ATP-dependent DNA helicase, RecQ family {ECO:0000313|EMBL:CCK76335.1}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica
ATP-dependent DNA helicase RecQ
BD02T64_scaffold_1200_17
unknown

Not on your lists

17348..17611
DNA (264bp) protein (88aa)

This feature has no annotations

BD02T64_scaffold_1200_18
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17674..18162)
DNA (489bp) protein (163aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
slyD2; FKBP-type peptidylprolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WN4_COLP3
BD02T64_scaffold_1200_19
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18177..19151)
DNA (975bp) protein (325aa)
tRNA-modifying protein YgfZ n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=YGFZ_COLP3
aminomethyltransferase
tRNA-modifying protein YgfZ {ECO:0000255|HAMAP-Rule:MF_01175}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psych
BD02T64_scaffold_1200_20
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19273..19524
DNA (252bp) protein (84aa)
Uncharacterized protein CPS_4131 n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Y4131_COLP3
Uncharacterized protein {ECO:0000313|EMBL:KJE39174.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas actin
TPR repeat-containing protein
BD02T64_scaffold_1200_21
unknown

Not on your lists

19715..19984
DNA (270bp) protein (90aa)

This feature has no annotations

BD02T64_scaffold_1200_22
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19950..21557)
DNA (1608bp) protein (536aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae;
nadB; L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=1 Tax=Colwellia piezophila RepID=UPI0003625A24
BD02T64_scaffold_1200_23
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21772..22350
DNA (579bp) protein (193aa)
RNA polymerase sigma factor n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WN8_COLP3
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:KJE39125.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomo
rpoE; RNA polymerase sigma factor RpoE
BD02T64_scaffold_1200_24
Thalassotalea sp. ND16A, Thalassotalea, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22375..22974
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Catenovulum agarivorans RepID=UPI00035FA943 rbh
Anti-sigma-E factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Regulator of SigE {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E anti-sigma factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E factor negative reg
anti sigma-E protein, RseA
BD02T64_scaffold_1200_25
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22971..23948
DNA (978bp) protein (326aa)
Sigma-E factor regulatory protein RseB n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WP0_COLP3
Sigma-E factor regulatory protein RseB {ECO:0000313|EMBL:KJE39126.1}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thal
rseB; sigma-E factor regulatory protein RseB
BD02T64_scaffold_1200_26
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23953..24429
DNA (477bp) protein (159aa)
Sigma-E factor regulatory protein RseC n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WP1_COLP3
rseC; sigma-E factor regulatory protein RseC
Sigma-E factor regulatory protein RseC {ECO:0000313|EMBL:AAZ24580.1}; TaxID=167879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwelli
BD02T64_scaffold_1200_27
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24518..26308
DNA (1791bp) protein (597aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP
Elongation factor 4 n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=LEPA_COLP3
lepA; GTP-binding protein LepA
BD02T64_scaffold_1200_28
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26343..27263
DNA (921bp) protein (307aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae;
lepB3; signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WP4_COLP3
BD02T64_scaffold_1200_29
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27263..27985
DNA (723bp) protein (241aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
rnc; ribonuclease III (EC:3.1.26.3)
ribonuclease III n=1 Tax=Colwellia piezophila RepID=UPI000373C77B
BD02T64_scaffold_1200_30
Thalassomonas actiniarum, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27982..28890
DNA (909bp) protein (303aa)
GTPase Era n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q47WP6_COLP3
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=485447 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" sourc
era; GTP-binding protein Era
Displaying items 1-30 of 45 in total

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