ggKbase home page

BD02T64_scaffold_225

Search features with annotation key words

Displaying items 1-30 of 90 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_225_1

Not on your lists

comp(1..966)
DNA (966bp) protein (322aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK78165.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
tRNA delta(2)-isopentenylpyrophosphate transferase rbh
BD02T64_scaffold_225_2
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(959..1915)
DNA (957bp) protein (319aa)
Elongation factor P--(R)-beta-lysine ligase {ECO:0000256|SAAS:SAAS00088906}; EC=6.3.1.- {ECO:0000256|SAAS:SAAS00088909};; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source
Lysyl-tRNA synthetase-related protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YQI3_9GAMM rbh
lysyl-tRNA synthetase rbh
BD02T64_scaffold_225_3
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2027..2590)
DNA (564bp) protein (188aa)
Elongation factor P n=1 Tax=Teredinibacter turnerae (strain ATCC 39867 / T7901) RepID=EFP_TERTT rbh
efp; translation elongation factor P rbh
Elongation factor P {ECO:0000255|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000255|HAMAP-Rule:MF_00141};; TaxID=377629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonada
BD02T64_scaffold_225_4
marine gamma proteobacterium HTCC2143, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2637..3644
DNA (1008bp) protein (336aa)
Radical SAM domain protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8S1_9GAMM rbh
Radical SAM domain protein {ECO:0000313|EMBL:EAW32525.1}; TaxID=247633 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; BD1-7 clade.;" source="marine gamma proteobacterium HTCC2143.;
lysine 2,3-aminomutase
BD02T64_scaffold_225_5
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3830..5920
DNA (2091bp) protein (697aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YQI7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS09016.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
EAL domain-containing protein
BD02T64_scaffold_225_6
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5970..7190)
DNA (1221bp) protein (407aa)
phosphoserine phosphatase (EC:3.1.3.3)
phosphoserine phosphatase n=1 Tax=Teredinibacter turnerae RepID=UPI00035EB7D1 rbh
Phosphoserine phosphatase {ECO:0000313|EMBL:KJS09017.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
BD02T64_scaffold_225_7

Not on your lists

7353..8558
DNA (1206bp) protein (402aa)
Putative uncharacterized protein n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21LU3_SACD2 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL07159.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
BD02T64_scaffold_225_8
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8711..9106
DNA (396bp) protein (132aa)
Transcriptional regulator, putative n=1 Tax=gamma proteobacterium HTCC2207 PF8_9GAMM">RepID=Q1YPF8_9GAMM rbh
HTH-type transcriptional activator TipA {ECO:0000313|EMBL:ETN92559.1}; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
transcriptional regulator
BD02T64_scaffold_225_9
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9141..10310
DNA (1170bp) protein (390aa)
Isovaleryl-CoA dehydrogenase n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KM99_SIMAS
isovaleryl-CoA dehydrogenase
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:AFU99193.1}; TaxID=1117647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 21679 / JCM 13881
BD02T64_scaffold_225_10
Paraglaciecola polaris, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10370..11977
DNA (1608bp) protein (536aa)
3-methylcrotonyl-CoA carboxylase beta subunit {ECO:0000313|EMBL:GAC35426.1}; EC=6.4.1.4 {ECO:0000313|EMBL:GAC35426.1};; TaxID=1129793 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromona
Methylcrotonoyl-CoA carboxylase (EC:6.4.1.4)
3-methylcrotonyl-CoA carboxylase beta subunit n=1 Tax=Glaciecola polaris LMG 21857 RepID=K6ZHD4_9ALTE
BD02T64_scaffold_225_11
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11996..12787
DNA (792bp) protein (264aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KLW2_SIMAS
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AFU99195.1}; TaxID=1117647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 21679 / JCM 1388
BD02T64_scaffold_225_12

Not on your lists

comp(12870..13697)
DNA (828bp) protein (276aa)
Peptidyl-prolyl cis-trans isomerase C n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DV71_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL66746.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PpiC-type peptidyl-prolyl cis-trans isomerase
BD02T64_scaffold_225_13
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13804..14493)
DNA (690bp) protein (230aa)
NarI protein {ECO:0000313|EMBL:KIR19270.1}; EC=1.7.99.4 {ECO:0000313|EMBL:KIR19270.1};; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
Respiratory nitrate reductase gamma chain (EC:1.7.99.4)
Nitrate reductase n=1 Tax=Pseudomonas aeruginosa DHS01 RepID=V4X681_PSEAI rbh
BD02T64_scaffold_225_14
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14504..15205)
DNA (702bp) protein (234aa)
Nitrate reductase I molybdenum cofactor assembly chaperone NarJ n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U2ZS51_PSEAC rbh
Nitrate reductase I molybdenum cofactor assembly chaperone NarJ {ECO:0000313|EMBL:GAD63902.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae;
narJ; NarJ
BD02T64_scaffold_225_15
Pseudomonas sp. CFII68, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15210..16751)
DNA (1542bp) protein (514aa)
Respiratory nitrate reductase beta chain n=1 Tax=Pseudomonas sp. CFII68 RepID=S6GV29_9PSED rbh
nitrate reductase, respiratory nitrate reductase 2 subunit beta
Respiratory nitrate reductase beta chain {ECO:0000313|EMBL:EPJ77613.1}; TaxID=911243 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="P
BD02T64_scaffold_225_16
Kangiella koreensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16764..20543)
DNA (3780bp) protein (1260aa)
Nitrate reductase, alpha subunit n=1 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7RBW4_KANKD
nitrate reductase subunit alpha
Nitrate reductase, alpha subunit {ECO:0000313|EMBL:ACV26756.1}; TaxID=523791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella
BD02T64_scaffold_225_17
Kangiella koreensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20656..22269)
DNA (1614bp) protein (538aa)
Major facilitator superfamily MFS_1 n=1 Tax=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) RepID=C7RBW5_KANKD rbh
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACV26757.1}; TaxID=523791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangie
BD02T64_scaffold_225_18
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22298..23569)
DNA (1272bp) protein (424aa)
major facilitator transporter n=1 Tax=Pseudomonas nitroreducens RepID=UPI00030945F3
Major facilitator transporter {ECO:0000313|EMBL:KJK00994.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas
narK1; nitrite extrusion protein 1
BD02T64_scaffold_225_19

Not on your lists

23798..25690
DNA (1893bp) protein (631aa)
Respiratory nitrate reductase 1 alpha chain n=2 Tax=sulfur-oxidizing symbionts RepID=G2DAN1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL94504.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
two-component sensor NarX
BD02T64_scaffold_225_20
Marinobacter similis, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25791..26441
DNA (651bp) protein (217aa)
Two-component response regulator NarL n=2 Tax=Pseudomonas aeruginosa RepID=A6V0M9_PSEA7 rbh
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AHI29436.1}; TaxID=1420916 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter s
BD02T64_scaffold_225_21
Vibrio tasmaniensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26471..26968
DNA (498bp) protein (166aa)
lipid carrier protein n=1 Tax=Vibrio splendidus RepID=UPI00037A905B
hypothetical protein
Similar to putative lipid carrier protein {ECO:0000313|EMBL:CAV19630.1}; TaxID=575788 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio tasman
BD02T64_scaffold_225_22

Not on your lists

comp(27072..27509)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K4D4_DESAC rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN00907.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_225_23
unknown

Not on your lists

comp(27641..27895)
DNA (255bp) protein (85aa)

This feature has no annotations

BD02T64_scaffold_225_24
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27991..28401
DNA (411bp) protein (137aa)
Phage repressor protein, Serine peptidase, MEROPS family S24 n=2 Tax=Nitrosococcus oceani RepID=Q3JDG0_NITOC
peptidase S24, S26A and S26B
Peptidase S24 {ECO:0000313|EMBL:KFI20399.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
BD02T64_scaffold_225_25
unknown

Not on your lists

comp(28410..28754)
DNA (345bp) protein (115aa)

This feature has no annotations

BD02T64_scaffold_225_26
unknown

Not on your lists

comp(28760..29011)
DNA (252bp) protein (84aa)

This feature has no annotations

BD02T64_scaffold_225_27
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29104..29355
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YRX5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EAS46920.1}; TaxID=314287 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; SAR92 clade.;" source="gamma proteobacterium HTCC2207.;"
BD02T64_scaffold_225_28
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29421..30317)
DNA (897bp) protein (299aa)
Putative protease n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XG03_METNJ rbh
Putative protease {ECO:0000313|EMBL:ETN92187.1}; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
protease rbh
BD02T64_scaffold_225_29
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30402..31397)
DNA (996bp) protein (332aa)
Putative protease YhbU {ECO:0000313|EMBL:ETN92188.1}; EC=3.4.-.- {ECO:0000313|EMBL:ETN92188.1};; TaxID=1411685 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bac
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI0003701FD8 rbh
protease
BD02T64_scaffold_225_30
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(31470..31901)
DNA (432bp) protein (144aa)
Universal stress protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUQ1_9BACT
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
universal stress protein family
Displaying items 1-30 of 90 in total

View Taxonomy