ggKbase home page

BD02T64_scaffold_1055

Search features with annotation key words

Displaying items 1-30 of 44 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1055_1
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


1..300
DNA (300bp) protein (100aa)
30S ribosomal protein S18 n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YXZ0_AEQSU
30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aequorivita.;" source="Aequorivita subl
BD02T64_scaffold_1055_2
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


316..771
DNA (456bp) protein (152aa)
50S ribosomal protein L9 n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YXZ1_AEQSU
50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aequorivita.;" source="Aequorivita subli
BD02T64_scaffold_1055_3
Winogradskyella psychrotolerans, Winogradskyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

969..1091
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Winogradskyella psychrotolerans RS-3 RepID=S7XC02_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EPR73538.1}; TaxID=641526 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Winogradskyella.;" source="Winogradskyella ps
hypothetical protein
BD02T64_scaffold_1055_4
Gillisia limnaea, Gillisia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1196..1420
DNA (225bp) protein (75aa)
histidyl-tRNA synthetase n=1 Tax=Gillisia marina RepID=UPI00029B0676
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHQ04198.1}; TaxID=865937 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gillisia.;" source="Gillisia limnaea DSM 1574
BD02T64_scaffold_1055_5
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1413..1946)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI00031B3679
Uncharacterized protein {ECO:0000313|EMBL:EZH74060.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;
GNAT family acetyltransferase
BD02T64_scaffold_1055_6
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1939..3177)
DNA (1239bp) protein (413aa)
ABC-type antimicrobial peptide transport system, permease component n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YXZ3_AEQSU
antimicrobial peptide ABC transporter permease
ABC-type antimicrobial peptide transport system, permease component {ECO:0000313|EMBL:AFL81861.1}; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; A
BD02T64_scaffold_1055_7
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


3362..4732
DNA (1371bp) protein (457aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YXZ4_AEQSU rbh
BD02T64_scaffold_1055_8
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4746..5924
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI000373A784 rbh
Contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17312.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="F
phosphate-selective porin O and P
BD02T64_scaffold_1055_9
Siansivirga zeaxanthinifaciens, Siansivirga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5936..8080)
DNA (2145bp) protein (715aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00038054B9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJR04712.1}; TaxID=1454006 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Siansivirga.;" source="Siansivirga zeaxanthi
BD02T64_scaffold_1055_10
unknown

Not on your lists

comp(8070..8327)
DNA (258bp) protein (86aa)

This feature has no annotations

BD02T64_scaffold_1055_11
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8474..9631
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI000360722B
Uncharacterized protein {ECO:0000313|EMBL:EEC97068.1}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnson
hypothetical protein
BD02T64_scaffold_1055_12
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9624..10262
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036F1E53
Uncharacterized protein {ECO:0000313|EMBL:CCK75805.1}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica RB-8.;"
cyclase/dehydrase
BD02T64_scaffold_1055_13
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10271..11005)
DNA (735bp) protein (245aa)
Putative uncharacterized protein id=3979098 bin=GWF2_Bacteroidetes_33_16 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good rbh
hypothetical protein Tax=GWE2_Bacteroidetes_32_14_curated
hypothetical protein
BD02T64_scaffold_1055_14
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11005..13251)
DNA (2247bp) protein (749aa)
efflux transporter, HAE3 family Tax=GWF2_Bacteroidetes_41_31_curated
Efflux transporter, HAE3 family id=4185237 bin=GWF2_Bacteroidetes_40_14 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes rbh
efflux transporter, HAE3 family
BD02T64_scaffold_1055_15
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13301..14050)
DNA (750bp) protein (250aa)
3-oxo-5-alpha-steroid 4-dehydrogenase (EC:1.3.99.5) Tax=GWF2_Bacteroidetes_49_14_curated
3-oxo-5-alpha-steroid 4-dehydrogenase (EC:1.3.99.5)
3-oxo-5-alpha-steroid 4-dehydrogenase id=4132523 bin=GWF2_Bacteroidetes_49_14 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
BD02T64_scaffold_1055_16
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14047..15024)
DNA (978bp) protein (326aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICP2_FLUTR
Uncharacterized protein {ECO:0000313|EMBL:KJS07343.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
NAD-dependent epimerase/dehydratase
BD02T64_scaffold_1055_17
Gramella forsetii, Gramella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15390..15776
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M1B8_GRAFK rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL66413.1}; TaxID=411154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gramella.;" source="Gramella forsetii (strain
BD02T64_scaffold_1055_18
Tamlana sedimentorum, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15831..16676
DNA (846bp) protein (282aa)
4-amino-4-deoxychorismate lyase, putative n=1 Tax=unidentified eubacterium SCB49 RepID=A6ESN8_9BACT
Aminotransferase class IV {ECO:0000313|EMBL:KJD36015.1}; TaxID=1435349 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana sedimentorum.;"
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
BD02T64_scaffold_1055_19
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16685..17245)
DNA (561bp) protein (187aa)
Putative transcriptional regulator n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YY00_AEQSU
Transcriptional regulator {ECO:0000313|EMBL:KJJ39456.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vlad
putative transcriptional regulator
BD02T64_scaffold_1055_20
Mangrovimonas yunxiaonensis, Mangrovimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17387..17659)
DNA (273bp) protein (91aa)
DNA-binding protein HU-beta n=1 Tax=Formosa sp. AK20 RepID=M7N6K5_9FLAO
DNA-binding protein {ECO:0000313|EMBL:KFB00813.1}; TaxID=1197477 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Mangrovimonas.;" source="Mangrovimonas yunxiaone
DNA-binding protein HU-beta
BD02T64_scaffold_1055_21
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17841..18788)
DNA (948bp) protein (316aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=221126 species="B
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YY02_AEQSU
BD02T64_scaffold_1055_22
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18785..20686)
DNA (1902bp) protein (634aa)
ATP-dependent DNA helicase, RecQ family n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YY03_AEQSU
RecQ familyATP-dependent DNA helicase
ATP-dependent DNA helicase, RecQ family {ECO:0000313|EMBL:AFL81871.1}; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aequorivita.;" source="Aequor
BD02T64_scaffold_1055_23
Flavobacteriales bacterium ALC-1, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20683..21225)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UL88_9FLAO
putative ATPase
Uncharacterized protein {ECO:0000313|EMBL:EDP70480.1}; TaxID=391603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium ALC-1.;"
BD02T64_scaffold_1055_24
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21299..21589
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YY05_AEQSU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJJ39452.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vladiv
hypothetical protein
BD02T64_scaffold_1055_25
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21719..22336
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YY06_AEQSU
Methionyl-tRNA formyltransferase {ECO:0000313|EMBL:KJJ39451.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibact
hypothetical protein
BD02T64_scaffold_1055_26
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22450..23763
DNA (1314bp) protein (438aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=unidentified eubacterium SCB49 RepID=A6ESN0_9BACT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
BD02T64_scaffold_1055_27
unidentified eubacterium SCB49, Bacteroidetes, Bacteria

Not on your lists

comp(23767..24336)
DNA (570bp) protein (190aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000313|EMBL:EDM43508.1}; EC=2.5.1.7 {ECO:0000313|EMBL:EDM43508.1};; TaxID=50743 species="Bacteria; Bacteroidetes; environmental samples.;" sourc
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=unidentified eubacterium SCB49 RepID=A6ESM9_9BACT
hypothetical protein
BD02T64_scaffold_1055_28
BJP_IG2102_Flavobacteriales_34_12, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24420..24653)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Formosa sp. AK20 RepID=M7MG78_9FLAO
hypothetical protein
Tax=BJP_IG2102_Flavobacteriales_34_12
BD02T64_scaffold_1055_29
Winogradskyella psychrotolerans, Winogradskyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24781..25815)
DNA (1035bp) protein (345aa)
Arsenical-resistance protein ACR3 n=1 Tax=Winogradskyella psychrotolerans RS-3 RepID=S7VT99_9FLAO
Arsenical-resistance protein ACR3 {ECO:0000313|EMBL:EPR73475.1}; TaxID=641526 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Winogradskyella.;" source="Winograd
hypothetical protein
BD02T64_scaffold_1055_30
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25959..26819
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=unidentified eubacterium SCB49 RepID=A6ESM5_9BACT
Dihydrolipoamide dehydrogenase {ECO:0000313|EMBL:KJJ39445.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter
hypothetical protein
Displaying items 1-30 of 44 in total

View Taxonomy