ggKbase home page

BD02T64_scaffold_1835

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1835_1
unknown

Not on your lists

90..380
DNA (291bp) protein (97aa)

This feature has no annotations

BD02T64_scaffold_1835_2
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(401..1324)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Riemerella anatipestifer RepID=UPI00036E226E rbh
site-specific recombinase
Site-specific recombinase {ECO:0000313|EMBL:BAP30163.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacteriu
BD02T64_scaffold_1835_3
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1829..2350
DNA (522bp) protein (174aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobac
Shikimate kinase n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YS39_AEQSU
BD02T64_scaffold_1835_4
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2342..2845)
DNA (504bp) protein (168aa)
Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YS38_AEQSU rbh
Phosphoribosyltransferase {ECO:0000313|EMBL:KJJ37545.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vlad
pyrimidine operon attenuation protein/uracil phosphoribosyltransferase
BD02T64_scaffold_1835_5
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2880..3254)
DNA (375bp) protein (125aa)
RNA-binding S4 domain protein n=1 Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RIB1_CELLC
RNA-binding protein {ECO:0000313|EMBL:KJJ37544.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vladivosto
RNA-binding protein
BD02T64_scaffold_1835_6
unidentified eubacterium SCB49, Bacteroidetes, Bacteria

Not on your lists

3334..4380
DNA (1047bp) protein (349aa)
Putative uncharacterized protein n=1 Tax=unidentified eubacterium SCB49 RepID=A6ERR7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDM43908.1}; TaxID=50743 species="Bacteria; Bacteroidetes; environmental samples.;" source="unidentified eubacterium SCB49.;"
hypothetical protein
BD02T64_scaffold_1835_7
Gramella forsetii, Gramella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4481..5464)
DNA (984bp) protein (328aa)
transketolase (EC:2.2.1.-)
Transketolase C-terminal section {ECO:0000313|EMBL:CAL65577.1}; EC=2.2.1.- {ECO:0000313|EMBL:CAL65577.1};; TaxID=411154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteri
transketolase n=1 Tax=Gillisia marina RepID=UPI00029ACB9F
BD02T64_scaffold_1835_8
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5451..6377)
DNA (927bp) protein (309aa)
Transketolase, beta subunit n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YS34_AEQSU rbh
transketolase
Transketolase, beta subunit {ECO:0000313|EMBL:AFL79802.1}; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aequorivita.;" source="Aequorivita sublit
BD02T64_scaffold_1835_9
unidentified eubacterium SCB49, Bacteroidetes, Bacteria

Not on your lists

6527..7657
DNA (1131bp) protein (377aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzym
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=unidentified eubacterium SCB49 RepID=A6ERS0_9BACT rbh
BD02T64_scaffold_1835_10
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

7662..8741
DNA (1080bp) protein (360aa)
Putative permease n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YS32_AEQSU rbh
putative permease
Putative permease {ECO:0000313|EMBL:AFL79800.1}; Flags: Precursor;; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aequorivita.;" source="Aequorivi
BD02T64_scaffold_1835_11
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8728..9630
DNA (903bp) protein (301aa)
Putative permease, DMT superfamily n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YS31_AEQSU rbh
Permease {ECO:0000313|EMBL:KJJ37538.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vladivostokensis.;"
putative permease, DMT superfamily
BD02T64_scaffold_1835_12
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9684..10637
DNA (954bp) protein (318aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=unidentified eubacterium SCB49 RepID=A6ERS3_9BACT rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
acetyl-CoA carboxylase, carboxyl transferase subunit alpha
BD02T64_scaffold_1835_13
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10804..12357
DNA (1554bp) protein (518aa)
primary replicative DNA helicase (EC:3.6.1.-)
Primary replicative DNA helicase n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YS29_AEQSU rbh
DNA helicase {ECO:0000313|EMBL:KJJ37536.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vladivostokensis.
BD02T64_scaffold_1835_14
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12445..13704
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YS28_AEQSU rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL79796.1}; Flags: Precursor;; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aequorivita.;" source="Aeq
BD02T64_scaffold_1835_15
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13786..14382
DNA (597bp) protein (199aa)
Adenylate cyclase-related protein n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4ARD1_MARSH
adenylate cyclase-like protein
Adenylate cyclase-related protein {ECO:0000313|EMBL:EAR01154.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp
BD02T64_scaffold_1835_16
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14372..14743
DNA (372bp) protein (124aa)
Adenylate cyclase-related protein n=1 Tax=Maribacter sp. (strain HTCC2170 / KCCM 42371) RepID=A4ARD1_MARSH
adenylate cyclase-like protein
Adenylate cyclase-related protein {ECO:0000313|EMBL:EAR01154.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp
BD02T64_scaffold_1835_17
unknown

Not on your lists

14731..14865
DNA (135bp) protein (45aa)

This feature has no annotations

BD02T64_scaffold_1835_18
Cellulophaga geojensis, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14860..15477)
DNA (618bp) protein (206aa)
Electron transport protein SCO1/SenC n=1 Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RBM1_CELLC rbh
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EWH14774.1}; TaxID=1328323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulo
electron transporter
BD02T64_scaffold_1835_19

Not on your lists

comp(15497..16099)
DNA (603bp) protein (201aa)
Conserved hypotheical membrane protein n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L642_ZOBGA rbh
Uncharacterized protein {ECO:0000313|EMBL:KKO00205.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
BD02T64_scaffold_1835_20
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16065..16841)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R0Z8_OWEHD rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV31669.1}; Flags: Precursor;; TaxID=926562 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenwe
BD02T64_scaffold_1835_21
Cellulophaga lytica, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16868..17173)
DNA (306bp) protein (102aa)
EF hand repeat-containing protein n=1 Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RBL8_CELLC rbh
hypothetical protein
EF hand repeat-containing protein {ECO:0000313|EMBL:ADY30668.1}; TaxID=867900 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophag
BD02T64_scaffold_1835_22

Not on your lists

17366..18409
DNA (1044bp) protein (348aa)
Signal transduction histidine kinase, LytS n=1 Tax=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) RepID=E6XEL4_CELAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KKO00214.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
histidine kinase rbh
BD02T64_scaffold_1835_23
Formosa agariphila, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18396..19073
DNA (678bp) protein (226aa)
Two-component system response regulator, LytTR f amily n=1 Tax=Formosa agariphila KMM 3901 RepID=T2KK17_9FLAO rbh
Two-component system response regulator, LytTR f amily {ECO:0000313|EMBL:CDF79237.1}; TaxID=1347342 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" so
LytTR family two component transcriptional regulator rbh
BD02T64_scaffold_1835_24
unidentified eubacterium SCB49, Bacteroidetes, Bacteria

Not on your lists


comp(19153..19497)
DNA (345bp) protein (115aa)
50S ribosomal protein L20 n=1 Tax=unidentified eubacterium SCB49 RepID=A6ERS9_9BACT rbh
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=50743 species="Bacteria; Bacteroidetes; environmental samples.;" source="unidentified eubacterium SCB4
BD02T64_scaffold_1835_25
unidentified eubacterium SCB49, Bacteroidetes, Bacteria

Not on your lists


comp(19621..19818)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=unidentified eubacterium SCB49 RepID=A6ERT0_9BACT rbh
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=50743 species="Bacteria; Bacteroidetes; environmental samples.;" source="unidentified eubacterium SCB4
50S ribosomal protein L35
BD02T64_scaffold_1835_26
unidentified eubacterium SCB49, Bacteroidetes, Bacteria

Not on your lists

comp(19925..20335)
DNA (411bp) protein (137aa)
Translation initiation factor IF-3 n=1 Tax=unidentified eubacterium SCB49 RepID=A6ERT1_9BACT rbh
Translation initiation factor IF-3 {ECO:0000313|EMBL:EDM43922.1}; TaxID=50743 species="Bacteria; Bacteroidetes; environmental samples.;" source="unidentified eubacterium SCB49.;"
translation initiation factor 3 (bIF-3)
BD02T64_scaffold_1835_27
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20495..22441)
DNA (1947bp) protein (649aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YS23_AEQSU rbh
Displaying 27 items

View Taxonomy