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BD02T64_scaffold_1039

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1039_1
unknown

Not on your lists

comp(2..148)
DNA (147bp) protein (49aa)

This feature has no annotations

BD02T64_scaffold_1039_2
Loktanella hongkongensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(641..2152)
DNA (1512bp) protein (504aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EYD72551.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYD72551.1};; TaxID=1122180 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodo
hypothetical protein n=1 Tax=Loktanella hongkongensis RepID=UPI000369FF81 rbh
long-chain-fatty-acid--CoA ligase, putative
BD02T64_scaffold_1039_3
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2152..3168)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0002FAFA45 rbh
2-nitropropane dioxygenase {ECO:0000313|EMBL:KID09986.1}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp.
2-nitropropane dioxygenase
BD02T64_scaffold_1039_4
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3165..3965)
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:KIX17714.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KIX17714.1};; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae;
enoyl-CoA hydratase n=1 Tax=Paracoccus zeaxanthinifaciens RepID=UPI0003B64C17 rbh
Enoyl-CoA hydratase/isomerase
BD02T64_scaffold_1039_5
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3962..4393)
DNA (432bp) protein (144aa)
Conserved domain protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RJ89_9RHOB rbh
Thioesterase superfamily domain-containing protein {ECO:0000313|EMBL:ETW12919.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;"
Thioesterase superfamily domain-containing protein
BD02T64_scaffold_1039_6
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4390..5487)
DNA (1098bp) protein (366aa)
Acyl-CoA dehydrogenase family protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RJ71_9RHOB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETW12920.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlantic
acyl-CoA dehydrogenase family protein
BD02T64_scaffold_1039_7
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5497..6693)
DNA (1197bp) protein (399aa)
FadE30 protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z4E3_9RHOB rbh
FadE30 protein {ECO:0000313|EMBL:GAD55927.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-0
acyl-CoA dehydrogenase rbh
BD02T64_scaffold_1039_8
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6705..7880)
DNA (1176bp) protein (392aa)
FadA_2 protein {ECO:0000313|EMBL:KIT17864.1}; EC=2.3.1.16 {ECO:0000313|EMBL:KIT17864.1};; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannas
Acetyl-CoA C-acyltransferase n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2HG87_9RHOB rbh
Acetyl-CoA C-acyltransferase
BD02T64_scaffold_1039_9
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7893..10004)
DNA (2112bp) protein (704aa)
Peroxisomal bifunctional enzyme n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CUN8_9RHOB rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KJZ23726.1}; TaxID=379347 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria mobi
short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
BD02T64_scaffold_1039_10
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10122..10928)
DNA (807bp) protein (269aa)
Transcriptional regulator, IclR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QWY8_9RHOB rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EEA96613.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Ps
transcriptional regulator, LclR family rbh
BD02T64_scaffold_1039_11
Loktanella hongkongensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10964..12304)
DNA (1341bp) protein (447aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Loktanella hongkongensis RepID=UPI000371100C rbh
TRAP-type C4-dicarboxylate transport system {ECO:0000313|EMBL:EYD72543.1}; TaxID=1122180 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source
TRAP dicarboxylate transporter subunit DctM
BD02T64_scaffold_1039_12
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12304..12813)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Loktanella hongkongensis RepID=UPI000360E471 rbh
Jannaschia aquimarina strain GSW-M26 jaqu_contig000012, whole genome shotgun sequence {ECO:0000313|EMBL:KIT17868.1}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterale
tripartite ATP-independent periplasmic transporter DctQ
BD02T64_scaffold_1039_13

Not on your lists

comp(12884..13945)
DNA (1062bp) protein (354aa)
TRAP dicarboxylate transporter, DctP subunit n=2 Tax=Sulfitobacter RepID=A3SEA9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN94267.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TRAP dicarboxylate transporter subunit DctP
BD02T64_scaffold_1039_14
Thalassobium sp. R2A62, Thalassobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14355..14591)
DNA (237bp) protein (79aa)
Integrase catalytic region n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DCQ0_9RHOB
Integrase catalytic region {ECO:0000313|EMBL:EET46779.1}; TaxID=633131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobium.;" source="Thalassobium s
transposase IS3
BD02T64_scaffold_1039_15
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14883..15113)
DNA (231bp) protein (77aa)
IS3 family protein element, transposase orfB n=1 Tax=Sulfitobacter sp. EE-36 RepID=A3SGX8_9RHOB
IS3 family transposase
IS3 family transposase {ECO:0000313|EMBL:AGI71559.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter a
BD02T64_scaffold_1039_16
Octadecabacter antarcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15245..15430)
DNA (186bp) protein (62aa)
IS3-family transposase {ECO:0000313|EMBL:AGI67464.1}; TaxID=391626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter a
BD02T64_scaffold_1039_17
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16091..16867
DNA (777bp) protein (259aa)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CW67_9RHOB rbh
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EEX08030.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="S
rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB rbh
BD02T64_scaffold_1039_18
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16966..17430
DNA (465bp) protein (155aa)
UPI0003D6B4A5 related cluster n=1 Tax=unknown RepID=UPI0003D6B4A5 rbh
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KIC07866.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;"
twin-arginine translocation pathway signal protein
BD02T64_scaffold_1039_19
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17621..18091
DNA (471bp) protein (157aa)
CoA-binding domain protein n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BAL5_9RHOB rbh
CoA-binding domain protein {ECO:0000313|EMBL:EDZ46340.1}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium Y4I.;"
CoA-binding domain protein
BD02T64_scaffold_1039_20
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18166..18480)
DNA (315bp) protein (105aa)
phosphoribosyl-ATP pyrophosphohydrolase (EC:3.6.1.31)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000255|HAMAP-Rule:MF_01020}; Short=PRA-PH {ECO:0000255|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000255|HAMAP-Rule:MF_01020};; TaxID=246200 species="Bacteria; P
phosphoribosyl-ATP pyrophosphatase n=1 Tax=Ruegeria conchae RepID=UPI000237A364 rbh
BD02T64_scaffold_1039_21
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18477..19238)
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP
imidazoleglycerol phosphate synthase, cyclase subunit (EC:4.1.3.-) rbh
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CW61_9RHOB rbh
BD02T64_scaffold_1039_22
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19295..19726)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1U1_9RHOB
Membrane protein {ECO:0000313|EMBL:KHJ54063.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
BD02T64_scaffold_1039_23
Ruegeria sp. ANG-S4, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19755..20243)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Ruegeria conchae RepID=UPI000237A361 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC47005.1}; TaxID=1577904 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. ANG-S4.
hypothetical protein
BD02T64_scaffold_1039_24
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20339..21061)
DNA (723bp) protein (241aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16) rbh
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0002D6DE79 rbh
BD02T64_scaffold_1039_25
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21195..21593
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LU96_RUEPO rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV94458.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (st
BD02T64_scaffold_1039_26
unknown

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21616..21870
DNA (255bp) protein (85aa)

This feature has no annotations

BD02T64_scaffold_1039_27
Leisingera sp. ANG-M7, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21931..22467)
DNA (537bp) protein (179aa)
alkyl hydroperoxide reductase n=1 Tax=Phaeobacter gallaeciensis RepID=UPI00030C2A31 rbh
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KIC39594.1}; TaxID=1577902 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera s
alkyl hydroperoxide reductase rbh
BD02T64_scaffold_1039_28
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22552..23286
DNA (735bp) protein (245aa)
Transcription regulator, AraC family n=1 Tax=Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107) RepID=I7EKC2_PHAIB rbh
Cupin {ECO:0000313|EMBL:KIC13604.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-Vp.;"
transcription regulator, AraC family rbh
BD02T64_scaffold_1039_29
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23495..23716
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. MED193 RepID=A3X4F7_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC09998.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG
BD02T64_scaffold_1039_30
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23962..24600)
DNA (639bp) protein (213aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BAM5_9RHOB rbh
imidazole glycerol phosphate synthase rbh
Displaying items 1-30 of 54 in total

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