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BD02T64_scaffold_1418

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
BD02T64_scaffold_1418_1

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comp(3..263)
DNA (261bp) protein (87aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Methylophaga lonarensis MPL RepID=M7NUH7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKN37521.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1418_2

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comp(279..1460)
DNA (1182bp) protein (394aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SYR4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN37522.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1418_3
Methylophaga frappieri, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1590..2588)
DNA (999bp) protein (333aa)
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=754477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichale
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) RepID=I1YK45_METFJ rbh
BD02T64_scaffold_1418_4

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comp(2945..4930)
DNA (1986bp) protein (662aa)
transketolase (EC:2.2.1.1)
Transketolase n=1 Tax=Methylophaga lonarensis MPL RepID=M7PEW1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN37525.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1418_5
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4954..5511)
DNA (558bp) protein (186aa)
Redoxin superfamily n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5R2_9GAMM rbh
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KGM08035.1}; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylopha
alkyl hydroperoxide reductase
BD02T64_scaffold_1418_6
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5638..6447)
DNA (810bp) protein (270aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
Dihydrodipicolinate reductase (EC:1.3.1.26) rbh
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5R5_9GAMM
BD02T64_scaffold_1418_7
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6477..7580)
DNA (1104bp) protein (368aa)
Chaperone protein DnaJ n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5R6_9GAMM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=637616 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methyl
chaperone protein DnaJ
BD02T64_scaffold_1418_8
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7665..9578)
DNA (1914bp) protein (638aa)
Chaperone protein DnaK n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5R7_9GAMM rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
chaperone protein DnaK
BD02T64_scaffold_1418_9

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comp(9701..10225)
DNA (525bp) protein (175aa)
Protein GrpE n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5R8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN08036.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Heat shock protein GrpE
BD02T64_scaffold_1418_10
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10348..12489)
DNA (2142bp) protein (714aa)
Signal transduction histidine kinase n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5T2V2_9GAMM rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:EGL53313.1}; TaxID=1026882 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Me
Multi-sensor hybrid histidine kinase (modular protein)
BD02T64_scaffold_1418_11
unknown

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comp(12582..13028)
DNA (447bp) protein (149aa)

This feature has no annotations

BD02T64_scaffold_1418_12

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comp(13207..13938)
DNA (732bp) protein (244aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SYP9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKN08037.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1418_13
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13951..14391)
DNA (441bp) protein (147aa)
ribonuclease HI (EC:3.1.26.4)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00
Ribonuclease H n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XG77_METNJ rbh
BD02T64_scaffold_1418_14
Methylophaga aminisulfidivorans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14473..15198)
DNA (726bp) protein (242aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SWT5_9GAMM rbh
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EGL54532.1}; TaxID=1026882 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methy
SAM-dependent methyltransferase
BD02T64_scaffold_1418_15

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15236..16006
DNA (771bp) protein (257aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5S2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN08040.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BD02T64_scaffold_1418_16

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comp(16082..16876)
DNA (795bp) protein (265aa)
MscS Mechanosensitive ion channel n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SWT3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN08041.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Potassium efflux system KefA protein
BD02T64_scaffold_1418_17
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16888..17901)
DNA (1014bp) protein (338aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:00
dihydroorotate dehydrogenase (EC:1.3.98.1)
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5S4_9GAMM rbh
BD02T64_scaffold_1418_18

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comp(17902..18735)
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5S5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM90295.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
BD02T64_scaffold_1418_19
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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18872..20530
DNA (1659bp) protein (553aa)
Membrane-bound lytic murein transglycosylase D {ECO:0000313|EMBL:KGM08019.1}; EC=3.2.1.- {ECO:0000313|EMBL:KGM08019.1};; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotricha
LysM domain protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5S8_9GAMM rbh
membrane-bound lytic murein transglycosylase D
BD02T64_scaffold_1418_20

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20496..20996
DNA (501bp) protein (167aa)
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5S9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM90297.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
tRNA (cytosine34-2'-O-)-methyltransferase
BD02T64_scaffold_1418_21
Methylophaga lonarensis, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21139..22704
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Methylophaga lonarensis MPL RepID=M7NUF5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EMR12408.1}; TaxID=1286106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga lo
hypothetical protein
BD02T64_scaffold_1418_22
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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22902..27143
DNA (4242bp) protein (1414aa)
NMT1/THI5 like family n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N5T0_9GAMM rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:KGM08017.1}; TaxID=392484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Pi
diguanylate cyclase/phosphodiesterase rbh
BD02T64_scaffold_1418_23
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

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27208..28206
DNA (999bp) protein (333aa)
Cyanophycin synthase (EC:6.3.2.30) Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
D-alanine-D-alanine ligase and related ATP-grasp enzymes-like protein n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3AS15_CHLCH rbh
D-alanine-D-alanine ligase-like protein
Displaying 23 items

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